{"id":"https://openalex.org/W2013867005","doi":"https://doi.org/10.1016/j.jsb.2005.09.007","title":"Particle picking by segmentation: A comparative study with SPIDER-based manual particle picking","display_name":"Particle picking by segmentation: A comparative study with SPIDER-based manual particle picking","publication_year":2005,"publication_date":"2005-11-17","ids":{"openalex":"https://openalex.org/W2013867005","doi":"https://doi.org/10.1016/j.jsb.2005.09.007","mag":"2013867005","pmid":"https://pubmed.ncbi.nlm.nih.gov/16330229"},"language":"en","primary_location":{"id":"doi:10.1016/j.jsb.2005.09.007","doi":"https://doi.org/10.1016/j.jsb.2005.09.007","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jsb.2005.09.007","pdf_url":null,"source":{"id":"https://openalex.org/S89954039","display_name":"Journal of Structural Biology","issn_l":"1047-8477","issn":["1047-8477","1095-8657"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Structural Biology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015700022","display_name":"Umesh P. S. Adiga","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Umesh Adiga","raw_affiliation_strings":["Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1, Cyclotron Road, Berkeley, CA 94720, USA. UPAdiga@lbl.gov","Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1, Cyclotron Road, Berkeley, CA 94720, USA. UPAdiga@lbl.gov","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":null,"display_name":"William T. Baxter","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William T. Baxter","raw_affiliation_strings":["Wadsworth Center, Health Research, Inc., Empire State Plaza, Albany, NY 12201-0509, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wadsworth Center, Health Research, Inc., Empire State Plaza, Albany, NY 12201-0509, USA","institution_ids":["https://openalex.org/I1339417872"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038009857","display_name":"Richard J. Hall","orcid":"https://orcid.org/0000-0002-9879-9476","observed_orcids":["https://orcid.org/0000-0002-9879-9476"]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard J. Hall","raw_affiliation_strings":["Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1, Cyclotron Road, Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1, Cyclotron Road, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016919432","display_name":"Beate Rockel","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Beate Rockel","raw_affiliation_strings":["Department of Molecular Structural Biology, Max-Planck-Institute for Biochemistry, Martinsried, Germany","Baumeister, Wolfgang / Molecular Structural Biology, Max Planck Institute of Biochemistry, Max Planck Society"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Structural Biology, Max-Planck-Institute for Biochemistry, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]},{"raw_affiliation_string":"Baumeister, Wolfgang / Molecular Structural Biology, Max Planck Institute of Biochemistry, Max Planck Society","institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110074341","display_name":"Bimal K. Rath","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bimal K. Rath","raw_affiliation_strings":["Wadsworth Center, Health Research, Inc., Empire State Plaza, Albany, NY 12201-0509, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wadsworth Center, Health Research, Inc., Empire State Plaza, Albany, NY 12201-0509, USA","institution_ids":["https://openalex.org/I1339417872"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042892654","display_name":"Joachim Frank","orcid":"https://orcid.org/0000-0001-5449-6943","observed_orcids":["https://orcid.org/0000-0001-5449-6943","https://orcid.org/0000-0002-2442-1112"]},"institutions":[{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joachim Frank","raw_affiliation_strings":["Howard Hughes Medical Institute at Wadsworth Center, Department of Biomedical Sciences, University at Albany, SUNY, Empire State Plaza, Albany, NY 12201-0509, USA","Wadsworth Center, Health Research Inc., Empire State Plaza, Albany, NY 12201-0509, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Howard Hughes Medical Institute at Wadsworth Center, Department of Biomedical Sciences, University at Albany, SUNY, Empire State Plaza, Albany, NY 12201-0509, USA","institution_ids":["https://openalex.org/I1339417872","https://openalex.org/I1344073410","https://openalex.org/I392282"]},{"raw_affiliation_string":"Wadsworth Center, Health Research Inc., Empire State Plaza, Albany, NY 12201-0509, USA","institution_ids":["https://openalex.org/I1339417872"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045999939","display_name":"Robert M. Glaeser","orcid":"https://orcid.org/0000-0003-1955-1825","observed_orcids":["https://orcid.org/0000-0003-1955-1825"]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Glaeser","raw_affiliation_strings":["Department of Molecular and Cell Biology, University of California at Berkeley, CA 94720, USA","Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1, Cyclotron Road, Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular and Cell Biology, University of California at Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1, Cyclotron Road, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5015700022"],"corresponding_institution_ids":["https://openalex.org/I148283060"],"apc_list":{"value":4350,"currency":"USD","value_usd":4350},"apc_paid":null,"fwci":2.2921,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.87406716,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"152","issue":"3","first_page":"211","last_page":"220"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/particle-picking","display_name":"particle picking","score":0.6909999847412109},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"image segmentation","score":0.9020000100135803},{"id":"https://openalex.org/keywords/spiders","display_name":"spiders","score":0.5830000042915344},{"id":"https://openalex.org/keywords/ribosome","display_name":"ribosome","score":0.41200000047683716},{"id":"https://openalex.org/keywords/tripeptidyl-peptidase-ii","display_name":"tripeptidyl peptidase II","score":0.9850000143051147}],"concepts":[{"id":"https://openalex.org/C3018767501","wikidata":"https://www.wikidata.org/wiki/Q130416","display_name":"Electron micrographs","level":3,"score":0.7640331983566284},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6409997940063477},{"id":"https://openalex.org/C2778517922","wikidata":"https://www.wikidata.org/wiki/Q7140482","display_name":"Particle (ecology)","level":2,"score":0.6007093191146851},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5239784121513367},{"id":"https://openalex.org/C65293305","wikidata":"https://www.wikidata.org/wiki/Q7523967","display_name":"Single particle analysis","level":3,"score":0.4934767484664917},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.46944236755371094},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45073169469833374},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.432190477848053},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.37206172943115234},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2323179841041565},{"id":"https://openalex.org/C93877712","wikidata":"https://www.wikidata.org/wiki/Q132560","display_name":"Electron microscope","level":2,"score":0.20195996761322021},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.19067123532295227},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18084606528282166},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14428162574768066},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.12585234642028809},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C2779345167","wikidata":"https://www.wikidata.org/wiki/Q104541","display_name":"Aerosol","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000626","descriptor_name":"Aminopeptidases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004152","descriptor_name":"Dipeptidyl-Peptidases and Tripeptidyl-Peptidases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D010316","descriptor_name":"Particle Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D012697","descriptor_name":"Serine Endopeptidases","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.jsb.2005.09.007","doi":"https://doi.org/10.1016/j.jsb.2005.09.007","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jsb.2005.09.007","pdf_url":null,"source":{"id":"https://openalex.org/S89954039","display_name":"Journal of Structural Biology","issn_l":"1047-8477","issn":["1047-8477","1095-8657"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Structural Biology","raw_type":"journal-article"},{"id":"pmid:16330229","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16330229","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of structural biology","raw_type":"Comparative Study"},{"id":"pmh:oai:edoc.mpg.de:264607","doi":null,"is_oa":false,"landing_page_url":"http://edoc.mpg.de/264607","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Structural Biology, v.152, 211-220 (2005)","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G6687789030","display_name":null,"funder_award_id":"GM 62989","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7684444057","display_name":"Automation Technology for High Throughput Cryo-EM","funder_award_id":"R01GM062989","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1492556495","https://openalex.org/W1607131856","https://openalex.org/W1963792029","https://openalex.org/W1965771505","https://openalex.org/W1970673802","https://openalex.org/W1983751391","https://openalex.org/W1995727867","https://openalex.org/W2002924743","https://openalex.org/W2003382761","https://openalex.org/W2005601437","https://openalex.org/W2008815323","https://openalex.org/W2011061704","https://openalex.org/W2038111097","https://openalex.org/W2069915544","https://openalex.org/W2126408091","https://openalex.org/W2128148365","https://openalex.org/W2137206793","https://openalex.org/W2149705812","https://openalex.org/W2156014569","https://openalex.org/W2159878464","https://openalex.org/W2340480757","https://openalex.org/W4252839115"],"related_works":["https://openalex.org/W2159878464","https://openalex.org/W1970673802","https://openalex.org/W1535959042","https://openalex.org/W2111172731","https://openalex.org/W2121209856","https://openalex.org/W2066728865","https://openalex.org/W2789387007","https://openalex.org/W2786417219","https://openalex.org/W2260753842","https://openalex.org/W2040827299"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
