{"id":"https://openalex.org/W2012519212","doi":"https://doi.org/10.3109/10929080209146012","title":"Brain Atlas Deformation in the Presence of Small and Large Space-Occupying Tumors","display_name":"Brain Atlas Deformation in the Presence of Small and Large Space-Occupying Tumors","publication_year":2002,"publication_date":"2002-01-01","ids":{"openalex":"https://openalex.org/W2012519212","doi":"https://doi.org/10.3109/10929080209146012","mag":"2012519212","pmid":"https://pubmed.ncbi.nlm.nih.gov/12173876"},"language":"en","primary_location":{"id":"doi:10.3109/10929080209146012","doi":"https://doi.org/10.3109/10929080209146012","is_oa":false,"landing_page_url":"https://doi.org/10.3109/10929080209146012","pdf_url":null,"source":{"id":"https://openalex.org/S73355073","display_name":"Computer Aided Surgery","issn_l":"1092-9088","issn":["1092-9088","1097-0150"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Aided Surgery","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.tandfonline.com/doi/pdf/10.3109/10929080209146012?needAccess=true","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014896512","display_name":"Beno\u00eet M. Dawant","orcid":"https://orcid.org/0000-0002-3804-8400","observed_orcids":["https://orcid.org/0000-0002-3804-8400"]},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"B.M. Dawant","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA. benoit.dawant@vanderbilt.edu","Department of Electrical and Computer Engineering, Box 1662\u2010B, Vanderbilt University, Nashville, TN 37235"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA. benoit.dawant@vanderbilt.edu","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Box 1662\u2010B, Vanderbilt University, Nashville, TN 37235","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109865386","display_name":"Steven L. Hartmann","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S.L. Hartmann","raw_affiliation_strings":["Department of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee","Department of Electrical and Computer Engineering (B.M.D., S.P., S.G.) and Department of Biomedical Engineering (S.L.H.), Vanderbilt University, Nashville, Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering (B.M.D., S.P., S.G.) and Department of Biomedical Engineering (S.L.H.), Vanderbilt University, Nashville, Tennessee","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113674376","display_name":"Shiyan Pan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiyan Pan","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee","Department of Electrical and Computer Engineering (B.M.D., S.P., S.G.) and Department of Biomedical Engineering (S.L.H.), Vanderbilt University, Nashville, Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering (B.M.D., S.P., S.G.) and Department of Biomedical Engineering (S.L.H.), Vanderbilt University, Nashville, Tennessee","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111518449","display_name":"Srikanth Gadamsetty","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Gadamsetty","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee","Department of Electrical and Computer Engineering (B.M.D., S.P., S.G.) and Department of Biomedical Engineering (S.L.H.), Vanderbilt University, Nashville, Tennessee"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering (B.M.D., S.P., S.G.) and Department of Biomedical Engineering (S.L.H.), Vanderbilt University, Nashville, Tennessee","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5014896512"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":null,"apc_paid":null,"fwci":3.5855,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.92954583,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"7","issue":"1","first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11984","display_name":"Anatomy and Medical Technology","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/global-registration","display_name":"global registration","score":0.546999990940094},{"id":"https://openalex.org/keywords/local-registration","display_name":"local registration","score":0.9490000009536743},{"id":"https://openalex.org/keywords/optical-flow","display_name":"optical flow","score":0.75},{"id":"https://openalex.org/keywords/mutual-information","display_name":"mutual information","score":0.7519999742507935},{"id":"https://openalex.org/keywords/brain-structure-segmentation","display_name":"brain structure segmentation","score":0.5619999766349792},{"id":"https://openalex.org/keywords/radiotherapy-treatment-planning","display_name":"radiotherapy treatment planning","score":0.8220000267028809},{"id":"https://openalex.org/keywords/presurgical-planning","display_name":"presurgical planning","score":0.8740000128746033}],"concepts":[{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.951791524887085},{"id":"https://openalex.org/C157202957","wikidata":"https://www.wikidata.org/wiki/Q1659609","display_name":"Image warping","level":2,"score":0.7973783016204834},{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.7749291658401489},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6983292102813721},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6777031421661377},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6337283849716187},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5883903503417969},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.5155051350593567},{"id":"https://openalex.org/C2993925342","wikidata":"https://www.wikidata.org/wiki/Q28457374","display_name":"Fiber tract","level":4,"score":0.45899417996406555},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.4165398180484772},{"id":"https://openalex.org/C155542232","wikidata":"https://www.wikidata.org/wiki/Q736111","display_name":"Optical flow","level":3,"score":0.4114745855331421},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.19140544533729553},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.16534554958343506},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.14803627133369446},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12255990505218506},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.10871097445487976},{"id":"https://openalex.org/C2781192897","wikidata":"https://www.wikidata.org/wiki/Q822050","display_name":"White matter","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000716","descriptor_name":"Anatomy, Artistic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001932","descriptor_name":"Brain Neoplasms","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008488","descriptor_name":"Medical Illustration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011856","descriptor_name":"Radiographic Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3109/10929080209146012","doi":"https://doi.org/10.3109/10929080209146012","is_oa":false,"landing_page_url":"https://doi.org/10.3109/10929080209146012","pdf_url":null,"source":{"id":"https://openalex.org/S73355073","display_name":"Computer Aided Surgery","issn_l":"1092-9088","issn":["1092-9088","1097-0150"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Aided Surgery","raw_type":"journal-article"},{"id":"doi:10.1002/igs.10029","doi":"https://doi.org/10.1002/igs.10029","is_oa":true,"landing_page_url":"https://doi.org/10.1002/igs.10029","pdf_url":"https://www.tandfonline.com/doi/pdf/10.3109/10929080209146012?needAccess=true","source":{"id":"https://openalex.org/S73355073","display_name":"Computer Aided Surgery","issn_l":"1092-9088","issn":["1092-9088","1097-0150"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Aided Surgery","raw_type":"journal-article"},{"id":"pmid:12173876","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12173876","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer aided surgery : official journal of the International Society for Computer Aided Surgery","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1002/igs.10029","doi":"https://doi.org/10.1002/igs.10029","is_oa":true,"landing_page_url":"https://doi.org/10.1002/igs.10029","pdf_url":"https://www.tandfonline.com/doi/pdf/10.3109/10929080209146012?needAccess=true","source":{"id":"https://openalex.org/S73355073","display_name":"Computer Aided Surgery","issn_l":"1092-9088","issn":["1092-9088","1097-0150"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Aided Surgery","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8371999859809875}],"study_designs":[],"awards":[{"id":"https://openalex.org/G7148214441","display_name":"MR SPECTROSCOPY STUDIES OF ALCOHOL INDUCED BRAIN DAMAGE","funder_award_id":"R01AA010583","funder_id":"https://openalex.org/F4320337330","funder_display_name":"National Institute on Alcohol Abuse and Alcoholism"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337330","display_name":"National Institute on Alcohol Abuse and Alcoholism","ror":"https://ror.org/02jzrsm59"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2012519212.pdf","grobid_xml":"https://content.openalex.org/works/W2012519212.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W137011289","https://openalex.org/W1554791705","https://openalex.org/W1578285471","https://openalex.org/W1975111110","https://openalex.org/W2007153649","https://openalex.org/W2034432063","https://openalex.org/W2042796601","https://openalex.org/W2043234782","https://openalex.org/W2048141386","https://openalex.org/W2053133374","https://openalex.org/W2069456254","https://openalex.org/W2083507918","https://openalex.org/W2101649829","https://openalex.org/W2113576511","https://openalex.org/W2114218028","https://openalex.org/W2118573410","https://openalex.org/W2122530665","https://openalex.org/W2125504089","https://openalex.org/W2130686832","https://openalex.org/W2133467637","https://openalex.org/W2133584444","https://openalex.org/W2141304179","https://openalex.org/W2141796362","https://openalex.org/W2158167845","https://openalex.org/W2172117361","https://openalex.org/W2181887356","https://openalex.org/W2352384750","https://openalex.org/W2751023760"],"related_works":["https://openalex.org/W172700687","https://openalex.org/W7097969416","https://openalex.org/W6998725806","https://openalex.org/W1497105615","https://openalex.org/W7026876398","https://openalex.org/W2107574526","https://openalex.org/W7097627812","https://openalex.org/W7098842446","https://openalex.org/W1991325543","https://openalex.org/W1596336872"],"abstract_inverted_index":{"Brain":[0],"atlases":[1],"contain":[2],"a":[3,47,52,71,107,118,136,155],"wealth":[4],"of":[5,30,39,78,95,131,146,196,205,213],"information":[6,157],"that":[7,50,70,185],"could":[8],"be":[9,56,83,190],"used":[10,74,84,163,191],"in":[11,61,198],"radiation":[12,217],"therapy":[13,218],"or":[14],"neurosurgical":[15],"planning.":[16,221],"Until":[17],"now,":[18],"however,":[19],"when":[20],"large":[21,63,101],"space-occupying":[22],"tumors":[23],"and":[24,33,143,219],"lesions":[25,64],"drastically":[26],"alter":[27],"the":[28,112,123,126,129,132,144,147,186],"shape":[29],"brain":[31,53],"structures":[32,195,215],"substructures,":[34],"atlas-based":[35,76],"methods":[36],"have":[37,162],"been":[38],"limited":[40],"use.":[41],"In":[42],"this":[43,96,208],"work,":[44],"we":[45,68,161],"present":[46,92],"new":[48],"technique":[49,97],"permits":[51],"atlas":[54,124,134,165],"to":[55,110,121,192],"warped":[57,133],"onto":[58,125],"image":[59],"volumes":[60,114],"which":[62],"are":[65,180],"present.":[66],"First":[67],"show":[69],"method":[72,160,188,209],"previously":[73],"for":[75,85,98,164,207,216],"segmentation":[77],"normal":[79],"brains":[80,86,99,199],"can":[81,189],"also":[82],"with":[87,100,135,200],"small":[88],"lesions.":[89,102],"We":[90],"then":[91],"an":[93],"extension":[94],"This":[103],"involves":[104],"several":[105],"steps:":[106],"global":[108],"registration":[109,120,151],"bring":[111],"two":[113],"into":[115],"approximate":[116],"correspondence;":[117],"local":[119],"warp":[122],"patient":[127,141,178],"volume;":[128],"seeding":[130],"tumor":[137],"model":[138],"derived":[139,168],"from":[140,169],"data;":[142],"deformation":[145],"seeded":[148],"atlas.":[149],"Global":[150],"is":[152,167],"performed":[153],"using":[154],"mutual":[156],"criterion.":[158],"The":[159],"warping":[166],"optical":[170],"flow":[171],"principles.":[172],"Preliminary":[173],"results":[174,183],"obtained":[175],"on":[176],"real":[177],"images":[179],"presented.":[181],"These":[182],"indicate":[184],"proposed":[187],"automatically":[193],"segment":[194],"interest":[197],"gross":[201],"deformation.":[202],"Potential":[203],"areas":[204],"application":[206],"include":[210],"automatic":[211],"labeling":[212],"critical":[214],"presurgical":[220]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2016-06-24T00:00:00"}