{"id":"https://openalex.org/W2011004439","doi":"https://doi.org/10.1139/g06-139","title":"Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.)","display_name":"Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.)","publication_year":2007,"publication_date":"2007-02-01","ids":{"openalex":"https://openalex.org/W2011004439","doi":"https://doi.org/10.1139/g06-139","mag":"2011004439","pmid":"https://pubmed.ncbi.nlm.nih.gov/17546083"},"language":"en","primary_location":{"id":"doi:10.1139/g06-139","doi":"https://doi.org/10.1139/g06-139","is_oa":false,"landing_page_url":"https://doi.org/10.1139/g06-139","pdf_url":null,"source":{"id":"https://openalex.org/S170991295","display_name":"Genome","issn_l":"0831-2796","issn":["0831-2796","1480-3321"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310312929","host_organization_name":"Canadian Science Publishing","host_organization_lineage":["https://openalex.org/P4310312929"],"host_organization_lineage_names":["Canadian Science Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Shin-ichi Kawakami","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]},{"id":"https://openalex.org/I4210148627","display_name":"National Institutes for the Humanities","ror":"https://ror.org/040xx6p34","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627"]},{"id":"https://openalex.org/I4210160261","display_name":"Research Institute for Humanity and Nature","ror":"https://ror.org/05kkfq345","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shin-ichi Kawakami","raw_affiliation_strings":["National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","institution_ids":["https://openalex.org/I3018761593"]},{"raw_affiliation_string":"National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan","institution_ids":["https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054005925","display_name":"Kaworu Ebana","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]},{"id":"https://openalex.org/I4210148627","display_name":"National Institutes for the Humanities","ror":"https://ror.org/040xx6p34","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627"]},{"id":"https://openalex.org/I4210160261","display_name":"Research Institute for Humanity and Nature","ror":"https://ror.org/05kkfq345","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kaworu Ebana","raw_affiliation_strings":["National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","institution_ids":["https://openalex.org/I3018761593"]},{"raw_affiliation_string":"National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan","institution_ids":["https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110094880","display_name":"Tomotaro Nishikawa","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]},{"id":"https://openalex.org/I4210148627","display_name":"National Institutes for the Humanities","ror":"https://ror.org/040xx6p34","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627"]},{"id":"https://openalex.org/I4210160261","display_name":"Research Institute for Humanity and Nature","ror":"https://ror.org/05kkfq345","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomotaro Nishikawa","raw_affiliation_strings":["National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","institution_ids":["https://openalex.org/I3018761593"]},{"raw_affiliation_string":"National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan","institution_ids":["https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051076629","display_name":"Yoichiro Sato","orcid":"https://orcid.org/0000-0002-6673-4846","observed_orcids":["https://orcid.org/0000-0002-6673-4846"]},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]},{"id":"https://openalex.org/I4210148627","display_name":"National Institutes for the Humanities","ror":"https://ror.org/040xx6p34","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627"]},{"id":"https://openalex.org/I4210160261","display_name":"Research Institute for Humanity and Nature","ror":"https://ror.org/05kkfq345","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yo-ichiro Sato","raw_affiliation_strings":["National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","institution_ids":["https://openalex.org/I3018761593"]},{"raw_affiliation_string":"National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan","institution_ids":["https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001379804","display_name":"Duncan A. Vaughan","orcid":"https://orcid.org/0000-0002-6585-108X","observed_orcids":["https://orcid.org/0000-0002-6585-108X"]},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]},{"id":"https://openalex.org/I4210148627","display_name":"National Institutes for the Humanities","ror":"https://ror.org/040xx6p34","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627"]},{"id":"https://openalex.org/I4210160261","display_name":"Research Institute for Humanity and Nature","ror":"https://ror.org/05kkfq345","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Duncan A. Vaughan","raw_affiliation_strings":["National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","institution_ids":["https://openalex.org/I3018761593"]},{"raw_affiliation_string":"National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan","institution_ids":["https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103531523","display_name":"Koh-ichi Kadowaki","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]},{"id":"https://openalex.org/I4210148627","display_name":"National Institutes for the Humanities","ror":"https://ror.org/040xx6p34","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627"]},{"id":"https://openalex.org/I4210160261","display_name":"Research Institute for Humanity and Nature","ror":"https://ror.org/05kkfq345","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Koh-ichi Kadowaki","raw_affiliation_strings":["National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan","institution_ids":["https://openalex.org/I3018761593"]},{"raw_affiliation_string":"National Institutes for the Humanities, Research Institute for Humanity and Nature (RIHN), 335 Takashima, Kamigyo, Kyoto 602-0878, Japan","institution_ids":["https://openalex.org/I4210148627","https://openalex.org/I4210160261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6943,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.84253296,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":98},"biblio":{"volume":"50","issue":"2","first_page":"180","last_page":"187"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9115999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9115999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.03290000185370445,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.03150000050663948,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rice-domestication","display_name":"rice domestication","score":0.8149999976158142},{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.9629999995231628},{"id":"https://openalex.org/keywords/chloroplast-genome","display_name":"chloroplast genome","score":0.9480000138282776},{"id":"https://openalex.org/keywords/insertion-deletion-polymorphism","display_name":"insertion/deletion polymorphism","score":0.7480000257492065},{"id":"https://openalex.org/keywords/indica-rice","display_name":"Indica rice","score":0.703000009059906},{"id":"https://openalex.org/keywords/japonica-rice","display_name":"Oryza sativa subsp. japonica","score":1.0},{"id":"https://openalex.org/keywords/oryza-nivara","display_name":"Oryza nivara","score":0.9049999713897705},{"id":"https://openalex.org/keywords/oryza-rufipogon","display_name":"Oryza rufipogon","score":1.0},{"id":"https://openalex.org/keywords/wild-rice-relatives","display_name":"wild rice relatives","score":0.7749999761581421},{"id":"https://openalex.org/keywords/polyphyletic-origin","display_name":"polyphyletic origin","score":0.8370000123977661}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8819911479949951},{"id":"https://openalex.org/C2781450044","wikidata":"https://www.wikidata.org/wiki/Q2217322","display_name":"Oryza rufipogon","level":4,"score":0.8512978553771973},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.805853009223938},{"id":"https://openalex.org/C2779409272","wikidata":"https://www.wikidata.org/wiki/Q1757789","display_name":"Japonica","level":2,"score":0.6832822561264038},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.6682500839233398},{"id":"https://openalex.org/C134387633","wikidata":"https://www.wikidata.org/wiki/Q11395","display_name":"Domestication","level":2,"score":0.6327937245368958},{"id":"https://openalex.org/C162100973","wikidata":"https://www.wikidata.org/wiki/Q217743","display_name":"Polyphyly","level":5,"score":0.5832650065422058},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5343892574310303},{"id":"https://openalex.org/C2777923347","wikidata":"https://www.wikidata.org/wiki/Q690633","display_name":"Oryza","level":4,"score":0.5298526287078857},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44630804657936096},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.4316539168357849},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.22271913290023804},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.10796460509300232}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1139/g06-139","doi":"https://doi.org/10.1139/g06-139","is_oa":false,"landing_page_url":"https://doi.org/10.1139/g06-139","pdf_url":null,"source":{"id":"https://openalex.org/S170991295","display_name":"Genome","issn_l":"0831-2796","issn":["0831-2796","1480-3321"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310312929","host_organization_name":"Canadian Science Publishing","host_organization_lineage":["https://openalex.org/P4310312929"],"host_organization_lineage_names":["Canadian Science Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome","raw_type":"journal-article"},{"id":"pmid:17546083","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17546083","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1034.6719","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1034.6719","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.researchgate.net/profile/Kaworu_Ebana/publication/6290622_Genetic_variation_in_the_chloroplast_genomes_suggest_multiple_domestication_of_cultivated_Asian_rice_%28Oryza_sativa_L.%29._Genome/links/00b49523a3529f1082000000.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.8409000039100647}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W227691856","https://openalex.org/W909275559","https://openalex.org/W1967236710","https://openalex.org/W1976168963","https://openalex.org/W1978649068","https://openalex.org/W1979334520","https://openalex.org/W1984681572","https://openalex.org/W1985125182","https://openalex.org/W1988662537","https://openalex.org/W1991451870","https://openalex.org/W2002958213","https://openalex.org/W2026298958","https://openalex.org/W2032857155","https://openalex.org/W2041546943","https://openalex.org/W2053310638","https://openalex.org/W2057253210","https://openalex.org/W2058184739","https://openalex.org/W2064708663","https://openalex.org/W2082091267","https://openalex.org/W2091347470","https://openalex.org/W2100740073","https://openalex.org/W2101844654","https://openalex.org/W2110575722","https://openalex.org/W2116276025","https://openalex.org/W2127367029","https://openalex.org/W2130359037","https://openalex.org/W2146439539","https://openalex.org/W2151117139","https://openalex.org/W2164833394","https://openalex.org/W2171291651","https://openalex.org/W3145771150","https://openalex.org/W6995452960"],"related_works":["https://openalex.org/W2187230361","https://openalex.org/W2067560350","https://openalex.org/W2968744163","https://openalex.org/W7096525982","https://openalex.org/W2581450269","https://openalex.org/W2536719956","https://openalex.org/W2384273383","https://openalex.org/W2055272097","https://openalex.org/W2003453340","https://openalex.org/W1571358132"],"abstract_inverted_index":{"Two":[0],"hundred":[1],"and":[2,9,35,57,113],"seventy-five":[3],"accessions":[4,11],"of":[5,12,37,52,61,66,96,109,129,139,144,151,186],"cultivated":[6,187],"Asian":[7,188],"rice":[8,189],"44":[10],"AA":[13],"genome":[14,23,44,99,148,175],"Oryza":[15,55],"species":[16,56],"were":[17,77,85,102],"classified":[18],"into":[19,79,87],"8":[20,82],"chloroplast":[21],"(cp)":[22],"types":[24,84,100,122],"(A-H)":[25],"based":[26],"on":[27],"insertion-deletion":[28],"events":[29],"at":[30,161,191],"3":[31,97,119,145,153],"regions":[32],"(8K,":[33],"57K,":[34],"76K)":[36],"the":[38,50,58,62,67,106,118,130,172,197],"cp":[39,43,68,83,89,98,121,147,174],"genome.":[40,69],"The":[41,137],"ancestral":[42],"type":[45,165],"was":[46,154],"determined":[47],"according":[48],"to":[49,181],"frequency":[51],"occurrence":[53],"in":[54,105,156,196],"likely":[59],"evolution":[60],"variable":[63],"57K":[64],"region":[65],"When":[70],"2":[71],"nucleotide":[72],"substitutions":[73],"(AA":[74],"or":[75],"TT)":[76],"taken":[78],"account,":[80],"these":[81,152],"subdivided":[86],"11":[88],"types.":[90,149],"Most":[91],"indica":[92,120],"cultivars":[93,141],"had":[94,123,142],"1":[95,143,163],"that":[101,117,160],"also":[103],"identified":[104,155],"wild":[107],"relatives":[108],"rice,":[110],"O.":[111,114,131,134,157,169,198,201],"nivara":[112,135,202],"rufipogon,":[115,158],"suggesting":[116,159],"evolved":[124],"from":[125,168,190],"distinct":[126],"gene":[127],"pools":[128],"rufipogon":[132,170,199],"-":[133,200],"complex.":[136,203],"majority":[138],"japonica":[140,164],"different":[146],"One":[150],"least":[162,192],"is":[166],"derived":[167],"with":[171],"same":[173],"type.":[176],"These":[177],"results":[178],"provide":[179],"evidence":[180],"support":[182],"a":[183],"polyphyletic":[184],"origin":[185],"4":[193],"principal":[194],"lineages":[195]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
