{"id":"https://openalex.org/W2010338671","doi":"https://doi.org/10.1016/s0009-2614(02)01649-4","title":"A computational study on the stability of the protonated Schiff base of retinal in rhodopsin","display_name":"A computational study on the stability of the protonated Schiff base of retinal in rhodopsin","publication_year":2002,"publication_date":"2002-12-01","ids":{"openalex":"https://openalex.org/W2010338671","doi":"https://doi.org/10.1016/s0009-2614(02)01649-4","mag":"2010338671"},"language":"en","primary_location":{"id":"doi:10.1016/s0009-2614(02)01649-4","doi":"https://doi.org/10.1016/s0009-2614(02)01649-4","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0009-2614(02)01649-4","pdf_url":null,"source":{"id":"https://openalex.org/S44567922","display_name":"Chemical Physics Letters","issn_l":"0009-2614","issn":["0009-2614","1873-4448"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-d","jufo-1","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Chemical Physics Letters","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014198464","display_name":"Atsushi Yamada","orcid":"https://orcid.org/0000-0002-0887-0321","observed_orcids":["https://orcid.org/0000-0002-0887-0321"]},"institutions":[{"id":"https://openalex.org/I60134161","display_name":"Nagoya University","ror":"https://ror.org/04chrp450","country_code":"JP","type":"education","lineage":["https://openalex.org/I60134161"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"A Yamada","raw_affiliation_strings":["Department of Physics, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan","institution_ids":["https://openalex.org/I60134161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060036191","display_name":"Toshiaki Kakitani","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I60134161","display_name":"Nagoya University","ror":"https://ror.org/04chrp450","country_code":"JP","type":"education","lineage":["https://openalex.org/I60134161"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T Kakitani","raw_affiliation_strings":["Department of Physics, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan","institution_ids":["https://openalex.org/I60134161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061991672","display_name":"Shigeyoshi Yamamoto","orcid":"https://orcid.org/0000-0003-3780-534X","observed_orcids":["https://orcid.org/0000-0003-3780-534X"]},"institutions":[{"id":"https://openalex.org/I98940699","display_name":"Chukyo University","ror":"https://ror.org/04ajrmg05","country_code":"JP","type":"education","lineage":["https://openalex.org/I98940699"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"S Yamamoto","raw_affiliation_strings":["Faculty of Liberal Arts, Chukyo University, Showa-ku, Nagoya 466-8666, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Liberal Arts, Chukyo University, Showa-ku, Nagoya 466-8666, Japan","institution_ids":["https://openalex.org/I98940699"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075030102","display_name":"Takahisa Yamato","orcid":"https://orcid.org/0000-0002-0685-861X","observed_orcids":["https://orcid.org/0000-0002-0685-861X"]},"institutions":[{"id":"https://openalex.org/I60134161","display_name":"Nagoya University","ror":"https://ror.org/04chrp450","country_code":"JP","type":"education","lineage":["https://openalex.org/I60134161"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"T Yamato","raw_affiliation_strings":["Department of Physics, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan","institution_ids":["https://openalex.org/I60134161"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5075030102"],"corresponding_institution_ids":["https://openalex.org/I60134161"],"apc_list":{"value":3270,"currency":"USD","value_usd":3270},"apc_paid":null,"fwci":1.1256,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.7286011,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"366","issue":"5-6","first_page":"670","last_page":"675"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10002","display_name":"Advanced Chemical Physics Studies","score":0.005799999926239252,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.002099999925121665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rhodopsin","display_name":"rhodopsin","score":0.9070000052452087},{"id":"https://openalex.org/keywords/retinal","display_name":"retinal","score":0.7609999775886536},{"id":"https://openalex.org/keywords/schiff-base","display_name":"Schiff base","score":0.9470000267028809},{"id":"https://openalex.org/keywords/protonation-states","display_name":"protonation states","score":0.968999981880188},{"id":"https://openalex.org/keywords/amino-acid-side-chain-effects","display_name":"amino acid side chain effects","score":0.6399999856948853},{"id":"https://openalex.org/keywords/stabilization-energy","display_name":"stabilization energy","score":0.6399999856948853},{"id":"https://openalex.org/keywords/protein-ligand-interactions","display_name":"protein-ligand interactions","score":0.45399999618530273}],"concepts":[{"id":"https://openalex.org/C30095370","wikidata":"https://www.wikidata.org/wiki/Q899488","display_name":"Protonation","level":3,"score":0.9556214809417725},{"id":"https://openalex.org/C118629725","wikidata":"https://www.wikidata.org/wiki/Q2686738","display_name":"Deprotonation","level":3,"score":0.9216302037239075},{"id":"https://openalex.org/C202033177","wikidata":"https://www.wikidata.org/wiki/Q423107","display_name":"Rhodopsin","level":3,"score":0.8717774748802185},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.7508121132850647},{"id":"https://openalex.org/C2776428424","wikidata":"https://www.wikidata.org/wiki/Q2602701","display_name":"Schiff base","level":2,"score":0.7329346537590027},{"id":"https://openalex.org/C2780827179","wikidata":"https://www.wikidata.org/wiki/Q422001","display_name":"Retinal","level":2,"score":0.6105568408966064},{"id":"https://openalex.org/C2781442258","wikidata":"https://www.wikidata.org/wiki/Q46310","display_name":"Ab initio","level":2,"score":0.49880528450012207},{"id":"https://openalex.org/C34814092","wikidata":"https://www.wikidata.org/wiki/Q2268418","display_name":"Counterion","level":3,"score":0.47898077964782715},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.4506450295448303},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.4502236545085907},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.3757409453392029},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.33728134632110596},{"id":"https://openalex.org/C75473681","wikidata":"https://www.wikidata.org/wiki/Q188651","display_name":"Photochemistry","level":1,"score":0.32494479417800903},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.121207594871521},{"id":"https://openalex.org/C145148216","wikidata":"https://www.wikidata.org/wiki/Q36496","display_name":"Ion","level":2,"score":0.09561958909034729},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06657153367996216},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.05919140577316284},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/s0009-2614(02)01649-4","doi":"https://doi.org/10.1016/s0009-2614(02)01649-4","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0009-2614(02)01649-4","pdf_url":null,"source":{"id":"https://openalex.org/S44567922","display_name":"Chemical Physics Letters","issn_l":"0009-2614","issn":["0009-2614","1873-4448"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-d","jufo-1","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Chemical Physics Letters","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1963775206","https://openalex.org/W1967989654","https://openalex.org/W1968458945","https://openalex.org/W1977047030","https://openalex.org/W1977829473","https://openalex.org/W1983454126","https://openalex.org/W2003196055","https://openalex.org/W2009746180","https://openalex.org/W2018971522","https://openalex.org/W2022950330","https://openalex.org/W2029667189","https://openalex.org/W2035264896","https://openalex.org/W2042465191","https://openalex.org/W2047508855","https://openalex.org/W2066769462","https://openalex.org/W2076023906","https://openalex.org/W2079702927","https://openalex.org/W2081368534","https://openalex.org/W2097365951","https://openalex.org/W2122199548","https://openalex.org/W2149963584","https://openalex.org/W2338278417"],"related_works":["https://openalex.org/W2610852294","https://openalex.org/W1977047030","https://openalex.org/W2018408988","https://openalex.org/W2046491387","https://openalex.org/W7098134813","https://openalex.org/W1965891171","https://openalex.org/W4230502797","https://openalex.org/W1971557054","https://openalex.org/W199939520","https://openalex.org/W1974866508"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2016-06-24T00:00:00"}