{"id":"https://openalex.org/W2007188586","doi":"https://doi.org/10.1007/s12052-008-0090-3","title":"Opening the \u201cBlack Box\u201d: The Genetic and Biochemical Basis of Eye Evolution","display_name":"Opening the \u201cBlack Box\u201d: The Genetic and Biochemical Basis of Eye Evolution","publication_year":2008,"publication_date":"2008-10-01","ids":{"openalex":"https://openalex.org/W2007188586","doi":"https://doi.org/10.1007/s12052-008-0090-3","mag":"2007188586"},"language":"en","primary_location":{"id":"doi:10.1007/s12052-008-0090-3","doi":"https://doi.org/10.1007/s12052-008-0090-3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12052-008-0090-3","pdf_url":"https://evolution-outreach.biomedcentral.com/counter/pdf/10.1007/s12052-008-0090-3","source":{"id":"https://openalex.org/S152022294","display_name":"Evolution Education and Outreach","issn_l":"1936-6426","issn":["1936-6426","1936-6434"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","norway-1","poland-20","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Evolution: Education and Outreach","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://evolution-outreach.biomedcentral.com/counter/pdf/10.1007/s12052-008-0090-3","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036058830","display_name":"Todd H. Oakley","orcid":"https://orcid.org/0000-0002-4478-915X","observed_orcids":["https://orcid.org/0000-0002-4478-915X"]},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Todd H. Oakley","raw_affiliation_strings":["Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA, 93106, USA","Ecology Evolution and Marine Biology, University of California, Santa Barbara, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA, 93106, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Ecology Evolution and Marine Biology, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037861945","display_name":"M. Sabrina Pankey","orcid":"https://orcid.org/0000-0002-7061-9613","observed_orcids":["https://orcid.org/0000-0002-7061-9613"]},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Sabrina Pankey","raw_affiliation_strings":["Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA, 93106, USA","Ecology Evolution and Marine Biology, University of California, Santa Barbara, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA, 93106, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Ecology Evolution and Marine Biology, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5036058830"],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":{"value":2390,"currency":"USD","value_usd":2390},"apc_paid":{"value":2390,"currency":"USD","value_usd":2390},"fwci":13.246,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.98066552,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"1","issue":"4","first_page":"390","last_page":"402"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12182","display_name":"Evolution and Science Education","score":0.3285999894142151,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12182","display_name":"Evolution and Science Education","score":0.3285999894142151,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10778","display_name":"Philosophy and History of Science","score":0.19429999589920044,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.16419999301433563,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/eye-evolution","display_name":"eye evolution","score":1.0},{"id":"https://openalex.org/keywords/irreducible-complexity","display_name":"irreducible complexity","score":0.6069999933242798},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"gene duplication","score":0.9559999704360962},{"id":"https://openalex.org/keywords/comparative-analysis","display_name":"comparative analysis","score":0.3240000009536743},{"id":"https://openalex.org/keywords/evolution-education","display_name":"evolution education","score":0.6129999756813049}],"concepts":[{"id":"https://openalex.org/C188162584","wikidata":"https://www.wikidata.org/wiki/Q1076026","display_name":"Evolutionism","level":2,"score":0.7556320428848267},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.6607778072357178},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.5226109623908997},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.4871637523174286},{"id":"https://openalex.org/C2777855551","wikidata":"https://www.wikidata.org/wiki/Q12310021","display_name":"Subject (documents)","level":2,"score":0.4816786050796509},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.45630329847335815},{"id":"https://openalex.org/C124388736","wikidata":"https://www.wikidata.org/wiki/Q3247497","display_name":"Tree of life (biology)","level":4,"score":0.4139372408390045},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.38824743032455444},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3438844084739685},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.285629540681839},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.24931049346923828},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19165104627609253},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.1633678674697876},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.1608884632587433},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.09770765900611877},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s12052-008-0090-3","doi":"https://doi.org/10.1007/s12052-008-0090-3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12052-008-0090-3","pdf_url":"https://evolution-outreach.biomedcentral.com/counter/pdf/10.1007/s12052-008-0090-3","source":{"id":"https://openalex.org/S152022294","display_name":"Evolution Education and Outreach","issn_l":"1936-6426","issn":["1936-6426","1936-6434"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","norway-1","poland-20","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Evolution: Education and Outreach","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1007/s12052-008-0090-3","doi":"https://doi.org/10.1007/s12052-008-0090-3","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s12052-008-0090-3","pdf_url":"https://evolution-outreach.biomedcentral.com/counter/pdf/10.1007/s12052-008-0090-3","source":{"id":"https://openalex.org/S152022294","display_name":"Evolution Education and Outreach","issn_l":"1936-6426","issn":["1936-6426","1936-6434"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","jufo-1","norway-1","poland-20","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Evolution: Education and Outreach","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2007188586.pdf","grobid_xml":"https://content.openalex.org/works/W2007188586.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W26195142","https://openalex.org/W184363266","https://openalex.org/W224062611","https://openalex.org/W589719149","https://openalex.org/W627466247","https://openalex.org/W1532568177","https://openalex.org/W1552460409","https://openalex.org/W1554900570","https://openalex.org/W1557693421","https://openalex.org/W1587508968","https://openalex.org/W1606957740","https://openalex.org/W1611620823","https://openalex.org/W1675572849","https://openalex.org/W1889348486","https://openalex.org/W1915011327","https://openalex.org/W1964609725","https://openalex.org/W1971435248","https://openalex.org/W1971524741","https://openalex.org/W1984116068","https://openalex.org/W1986871642","https://openalex.org/W1987150096","https://openalex.org/W1989665437","https://openalex.org/W1990157150","https://openalex.org/W1993004939","https://openalex.org/W1993343824","https://openalex.org/W1994617186","https://openalex.org/W1998074653","https://openalex.org/W2006399179","https://openalex.org/W2007749893","https://openalex.org/W2018272303","https://openalex.org/W2020367177","https://openalex.org/W2025039338","https://openalex.org/W2033121774","https://openalex.org/W2035108601","https://openalex.org/W2041843731","https://openalex.org/W2048112824","https://openalex.org/W2077068888","https://openalex.org/W2080618944","https://openalex.org/W2094217838","https://openalex.org/W2096624534","https://openalex.org/W2096709995","https://openalex.org/W2100147128","https://openalex.org/W2103380215","https://openalex.org/W2114525641","https://openalex.org/W2125044359","https://openalex.org/W2138976449","https://openalex.org/W2141029861","https://openalex.org/W2141171315","https://openalex.org/W2145810663","https://openalex.org/W2149963584","https://openalex.org/W2152965010","https://openalex.org/W2158798844","https://openalex.org/W2165936781","https://openalex.org/W2176431604","https://openalex.org/W2176955198","https://openalex.org/W2178409599","https://openalex.org/W2179315325","https://openalex.org/W2187466185","https://openalex.org/W2233726023","https://openalex.org/W2319094220","https://openalex.org/W2489275798","https://openalex.org/W2513778405","https://openalex.org/W2744860591","https://openalex.org/W2798325698","https://openalex.org/W2883512297","https://openalex.org/W3017254895","https://openalex.org/W3042157038","https://openalex.org/W3123780293","https://openalex.org/W4231983662","https://openalex.org/W4237318773","https://openalex.org/W4254162487"],"related_works":["https://openalex.org/W564737003","https://openalex.org/W2128940420","https://openalex.org/W2123747127","https://openalex.org/W2126504768","https://openalex.org/W7099740080","https://openalex.org/W2056801907","https://openalex.org/W4388310198","https://openalex.org/W2036314723","https://openalex.org/W3036048453","https://openalex.org/W7097136956"],"abstract_inverted_index":{"Eyes":[0],"provide":[1,153],"a":[2,69,81],"rich":[3],"narrative":[4,21,137],"for":[5,140],"understanding":[6,61],"evolution,":[7],"having":[8],"attracted":[9],"the":[10,26,49,63,134,158,163],"attention":[11],"of":[12,28,51,62,112,157,160,165],"preeminent":[13],"scientists":[14],"and":[15,31,83,91,122,129,142,151],"communicators":[16],"alike.":[17],"Until":[18],"recently,":[19],"this":[20],"has":[22],"focused":[23],"primarily":[24],"on":[25,34,162],"evolution":[27,108],"eye":[29,39,107,166],"structure":[30],"far":[32],"less":[33],"biochemistry":[35,40,54],"or":[36],"genetics.":[37],"Although":[38],"was":[41],"once":[42],"likened":[43],"to":[44,125,147,152],"an":[45,58,154],"unknown":[46],"\u201cblack":[47],"box;\u201d":[48],"flood":[50],"discoveries":[52],"in":[53,66,89,94,145],"is":[55,138],"now":[56],"allowing":[57],"increasingly":[59],"detailed":[60,110],"processes":[64,115],"involved":[65],"vision.":[67],"As":[68],"result,":[70],"evolutionary":[71,99],"comparative":[72],"(\u201ctree-thinking\u201d)":[73],"analyses":[74],"that":[75],"use":[76],"these":[77],"data":[78],"currently":[79],"allow":[80],"new":[82,135],"still":[84],"unfolding":[85],"narrative,":[86],"both":[87],"richer":[88],"detail":[90],"more":[92],"comprehensive":[93],"scope.":[95],"Rather":[96],"than":[97],"toppling":[98],"theory":[100],"by":[101],"finding":[102],"irreducibly":[103],"complex":[104],"molecular":[105],"machines,":[106],"provides":[109],"accounts":[111],"how":[113],"natural":[114],"tinker":[116],"with":[117],"existing":[118],"genetic":[119],"components,":[120],"duplicating":[121],"recombining":[123],"them,":[124],"yield":[126],"complex,":[127],"intricate,":[128],"highly":[130],"functional":[131],"eyes.":[132],"Understanding":[133],"biochemical":[136],"critical":[139],"researchers":[141],"teachers":[143],"alike,":[144],"order":[146],"answer":[148],"anti-evolutionist":[149],"claims,":[150],"up-to-date":[155],"account":[156],"state":[159],"knowledge":[161],"subject":[164],"evolution.":[167]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2016-06-24T00:00:00"}
