{"id":"https://openalex.org/W2006384457","doi":"https://doi.org/10.1093/molbev/msn052","title":"The Preferential Retention of Starch Synthesis Genes Reveals the Impact of Whole-Genome Duplication on Grass Evolution","display_name":"The Preferential Retention of Starch Synthesis Genes Reveals the Impact of Whole-Genome Duplication on Grass Evolution","publication_year":2008,"publication_date":"2008-01-14","ids":{"openalex":"https://openalex.org/W2006384457","doi":"https://doi.org/10.1093/molbev/msn052","mag":"2006384457","pmid":"https://pubmed.ncbi.nlm.nih.gov/18296698"},"language":"en","primary_location":{"id":"doi:10.1093/molbev/msn052","doi":"https://doi.org/10.1093/molbev/msn052","is_oa":false,"landing_page_url":"https://doi.org/10.1093/molbev/msn052","pdf_url":null,"source":{"id":"https://openalex.org/S57552105","display_name":"Molecular Biology and Evolution","issn_l":"0737-4038","issn":["0737-4038","1537-1719"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Biology and Evolution","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026608819","display_name":"Yufeng Wu","orcid":"https://orcid.org/0000-0002-9086-6080","observed_orcids":["https://orcid.org/0000-0002-9086-6080"]},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112230","display_name":"State Key Laboratory of Plant Genomics","ror":"https://ror.org/0205xz563","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210112230"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Y. Wu","raw_affiliation_strings":["State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210112230","https://openalex.org/I4210124606"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100382807","display_name":"Zhengge Zhu","orcid":"https://orcid.org/0000-0003-4831-2890","observed_orcids":["https://orcid.org/0000-0003-4831-2890"]},"institutions":[{"id":"https://openalex.org/I94611258","display_name":"Hebei Normal University","ror":"https://ror.org/004rbbw49","country_code":"CN","type":"education","lineage":["https://openalex.org/I94611258"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Z. Zhu","raw_affiliation_strings":["\u2020 College of Biology, Hebei Normal University, Shijiazhuang, Hebei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u2020 College of Biology, Hebei Normal University, Shijiazhuang, Hebei, China","institution_ids":["https://openalex.org/I94611258"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019494632","display_name":"Ligeng Ma","orcid":"https://orcid.org/0000-0002-9200-7538","observed_orcids":["https://orcid.org/0000-0002-9200-7538"]},"institutions":[{"id":"https://openalex.org/I4210086405","display_name":"National Institute of Biological Sciences, Beijing","ror":"https://ror.org/00wksha49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210086405"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"L. Ma","raw_affiliation_strings":["\u2021 National Institute of Biological Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u2021 National Institute of Biological Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210086405"]}]},{"author_position":"last","author":{"id":null,"display_name":"M. Chen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112230","display_name":"State Key Laboratory of Plant Genomics","ror":"https://ror.org/0205xz563","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210112230"]},{"id":"https://openalex.org/I4210124606","display_name":"Institute of Genetics and Developmental Biology","ror":"https://ror.org/02aee5m12","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210124606"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"M. Chen","raw_affiliation_strings":["State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210112230","https://openalex.org/I4210124606"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3418,"currency":"USD","value_usd":3418},"apc_paid":null,"fwci":1.3616,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.80473254,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"25","issue":"6","first_page":"1003","last_page":"1006"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/whole-genome-doubling","display_name":"whole-genome duplication","score":0.9959999918937683},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"gene duplication","score":0.6959999799728394},{"id":"https://openalex.org/keywords/gene-loss","display_name":"gene loss","score":0.6660000085830688},{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.6309999823570251},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.8109999895095825},{"id":"https://openalex.org/keywords/starch-biosynthesis","display_name":"starch biosynthesis","score":0.8730000257492065},{"id":"https://openalex.org/keywords/polyploidy","display_name":"polyploidy","score":0.8309999704360962},{"id":"https://openalex.org/keywords/grass-evolution","display_name":"grass evolution","score":0.578000009059906},{"id":"https://openalex.org/keywords/grain-filling","display_name":"grain filling","score":0.699999988079071},{"id":"https://openalex.org/keywords/allotetraploid-genome","display_name":"allotetraploid genome","score":0.6610000133514404}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9212300777435303},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.8685010075569153},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7869504690170288},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7289845943450928},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5286046862602234},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.525576651096344},{"id":"https://openalex.org/C57808653","wikidata":"https://www.wikidata.org/wiki/Q7446270","display_name":"Segmental duplication","level":5,"score":0.4470340311527252},{"id":"https://openalex.org/C96942376","wikidata":"https://www.wikidata.org/wiki/Q21130714","display_name":"Catabolism","level":3,"score":0.42878782749176025},{"id":"https://openalex.org/C58677359","wikidata":"https://www.wikidata.org/wiki/Q7201511","display_name":"Plant evolution","level":4,"score":0.4146585762500763},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.3995119035243988},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.144119530916214},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06840690970420837},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.05420681834220886}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013213","descriptor_name":"Starch","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D013213","descriptor_name":"Starch","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020131","descriptor_name":"Genes, Duplicate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/molbev/msn052","doi":"https://doi.org/10.1093/molbev/msn052","is_oa":false,"landing_page_url":"https://doi.org/10.1093/molbev/msn052","pdf_url":null,"source":{"id":"https://openalex.org/S57552105","display_name":"Molecular Biology and Evolution","issn_l":"0737-4038","issn":["0737-4038","1537-1719"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Biology and Evolution","raw_type":"journal-article"},{"id":"pmid:18296698","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18296698","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular biology and evolution","raw_type":"Letter"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.40450000762939453,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1234972026","https://openalex.org/W1522752169","https://openalex.org/W1980856291","https://openalex.org/W1983193571","https://openalex.org/W1985535920","https://openalex.org/W1989663405","https://openalex.org/W2013075604","https://openalex.org/W2022366078","https://openalex.org/W2031320786","https://openalex.org/W2033106058","https://openalex.org/W2054755820","https://openalex.org/W2061148158","https://openalex.org/W2071325036","https://openalex.org/W2094776969","https://openalex.org/W2095891619","https://openalex.org/W2103017472","https://openalex.org/W2104567831","https://openalex.org/W2110065044","https://openalex.org/W2111306681","https://openalex.org/W2116876658","https://openalex.org/W2128965288","https://openalex.org/W2135123683","https://openalex.org/W2146396346","https://openalex.org/W2147122418","https://openalex.org/W2153574607","https://openalex.org/W2155651473","https://openalex.org/W2157882076","https://openalex.org/W2168955735","https://openalex.org/W2381162391"],"related_works":["https://openalex.org/W2381162391","https://openalex.org/W2095065561","https://openalex.org/W2077389481","https://openalex.org/W2204763727","https://openalex.org/W2101286315","https://openalex.org/W2110042203","https://openalex.org/W7098393728","https://openalex.org/W2142101951","https://openalex.org/W1839915066","https://openalex.org/W6911117132"],"abstract_inverted_index":{"Gene":[0],"duplication":[1,20],"is":[2],"a":[3,110],"major":[4],"force":[5],"in":[6,22,60,72,94,106,113],"evolution.":[7,133],"Here,":[8],"we":[9],"analyzed":[10],"the":[11,17,44,54,95,114,127],"fate":[12],"of":[13,35,38,53,64,77,126,129],"duplicated":[14,25,39,78,101],"genes":[15,26,79,102],"following":[16],"ancient":[18],"whole-genome":[19],"(WGD)":[21],"rice.":[23,117],"Polyploidy-derived":[24],"were":[27,66],"found":[28,67],"to":[29,68],"be":[30,69],"preferentially":[31,70],"lost":[32],"from":[33,50],"one":[34,104,124],"each":[36,107],"pair":[37],"chromosomal":[40],"segments,":[41],"suggesting":[42],"that":[43],"asymmetric":[45],"gene":[46],"loss":[47],"may":[48],"result":[49],"transcriptome":[51],"dominance":[52],"ancestral":[55],"allotetraploid":[56],"genome.":[57],"Genes":[58],"involved":[59],"synthesis":[61],"and":[62,85,103],"catabolism":[63],"saccharides":[65],"retained":[71],"rice,":[73],"reflecting":[74],"different":[75],"trajectories":[76],"formed":[80],"by":[81],"polyploidy":[82],"between":[83],"rice":[84],"Arabidopsis.":[86],"Further":[87],"studies":[88],"demonstrated":[89],"all":[90],"3":[91],"catalyzing":[92],"steps":[93],"starch":[96,120],"biosynthesis":[97,121],"pathway":[98,112,122],"have":[99],"polyploidy-derived":[100],"copy":[105],"step":[108],"forms":[109],"dominant":[111],"grain":[115],"filling-stage":[116],"The":[118],"new":[119],"reflects":[123],"aspect":[125],"impact":[128],"WGD":[130],"on":[131],"grass":[132]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
