{"id":"https://openalex.org/W2004487665","doi":"https://doi.org/10.1021/ja0303337","title":"Dynamics of Curved DNA Molecules: Prediction and Experiment","display_name":"Dynamics of Curved DNA Molecules: Prediction and Experiment","publication_year":2003,"publication_date":"2003-08-22","ids":{"openalex":"https://openalex.org/W2004487665","doi":"https://doi.org/10.1021/ja0303337","mag":"2004487665","pmid":"https://pubmed.ncbi.nlm.nih.gov/16220913"},"language":"en","primary_location":{"id":"doi:10.1021/ja0303337","doi":"https://doi.org/10.1021/ja0303337","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ja0303337","pdf_url":null,"source":{"id":"https://openalex.org/S111155417","display_name":"Journal of the American Chemical Society","issn_l":"0002-7863","issn":["0002-7863","1520-5126","1943-2984"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Chemical Society","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067747453","display_name":"Tali E. Haran","orcid":"https://orcid.org/0000-0002-9700-3392","observed_orcids":["https://orcid.org/0000-0002-9700-3392"]},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Tali E. Haran","raw_affiliation_strings":["Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138","institution_ids":["https://openalex.org/I103531236","https://openalex.org/I136199984","https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102000229","display_name":"Ilana Cohen","orcid":"https://orcid.org/0000-0002-0988-4063","observed_orcids":["https://orcid.org/0000-0002-0988-4063"]},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Ilana Cohen","raw_affiliation_strings":["Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138","institution_ids":["https://openalex.org/I103531236","https://openalex.org/I136199984","https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002141794","display_name":"Alexander Spasic","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Alexander Spasic","raw_affiliation_strings":["Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138","institution_ids":["https://openalex.org/I103531236","https://openalex.org/I136199984","https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060834723","display_name":"Kevin Yang","orcid":"https://orcid.org/0000-0001-9045-6826","observed_orcids":["https://orcid.org/0000-0001-9045-6826"]},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Kevin Yang","raw_affiliation_strings":["Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138","institution_ids":["https://openalex.org/I103531236","https://openalex.org/I136199984","https://openalex.org/I174306211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045188605","display_name":"Udayan Mohanty","orcid":"https://orcid.org/0000-0002-8778-974X","observed_orcids":["https://orcid.org/0000-0002-8778-974X"]},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Udayan Mohanty","raw_affiliation_strings":["Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Technion, Technion City, Haifa 32000, Israel, Department of Chemistry, Boston College, Chestnut Hill, Massachusetts 02467, and Harvard University, Cambridge, Massachusetts 02138","institution_ids":["https://openalex.org/I103531236","https://openalex.org/I136199984","https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4500,"currency":"USD","value_usd":4500},"apc_paid":null,"fwci":0.1886,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.41460506,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"125","issue":"37","first_page":"11160","last_page":"11161"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12274","display_name":"Electrostatics and Colloid Interactions","score":0.006500000134110451,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.0020000000949949026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-migration","display_name":"DNA migration","score":0.5910000205039978},{"id":"https://openalex.org/keywords/polyacrylamide-gel-electrophoresis","display_name":"polyacrylamide gel electrophoresis","score":0.9779999852180481},{"id":"https://openalex.org/keywords/electrostatic-persistence-length","display_name":"electrostatic persistence length","score":0.824999988079071},{"id":"https://openalex.org/keywords/hydrodynamic-interactions","display_name":"hydrodynamic interactions","score":0.8450000286102295},{"id":"https://openalex.org/keywords/ionic-strength","display_name":"ionic strength","score":0.6909999847412109},{"id":"https://openalex.org/keywords/dielectric-constant","display_name":"dielectric constant","score":0.746999979019165},{"id":"https://openalex.org/keywords/viscosity","display_name":"viscosity","score":0.6489999890327454},{"id":"https://openalex.org/keywords/2-methyl-2-4-pentanediol","display_name":"2-methyl-2,4-pentanediol","score":0.9490000009536743},{"id":"https://openalex.org/keywords/a-tracts","display_name":"A-tracts","score":0.8740000128746033},{"id":"https://openalex.org/keywords/solvent-interactions","display_name":"solvent interactions","score":0.5770000219345093},{"id":"https://openalex.org/keywords/end-to-end-distance","display_name":"end-to-end distance","score":0.8460000157356262}],"concepts":[{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.8814456462860107},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.7365871667861938},{"id":"https://openalex.org/C204389451","wikidata":"https://www.wikidata.org/wiki/Q178593","display_name":"Macromolecule","level":2,"score":0.6659742593765259},{"id":"https://openalex.org/C187428577","wikidata":"https://www.wikidata.org/wiki/Q898396","display_name":"Ionic strength","level":3,"score":0.6375246047973633},{"id":"https://openalex.org/C99895341","wikidata":"https://www.wikidata.org/wiki/Q366058","display_name":"Persistence length","level":3,"score":0.6214143633842468},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.6063541173934937},{"id":"https://openalex.org/C2780471494","wikidata":"https://www.wikidata.org/wiki/Q146505","display_name":"Solvent","level":2,"score":0.6047409176826477},{"id":"https://openalex.org/C44280652","wikidata":"https://www.wikidata.org/wiki/Q104837","display_name":"Phase (matter)","level":2,"score":0.5926765203475952},{"id":"https://openalex.org/C127172972","wikidata":"https://www.wikidata.org/wiki/Q128709","display_name":"Viscosity","level":2,"score":0.5862471461296082},{"id":"https://openalex.org/C200093464","wikidata":"https://www.wikidata.org/wiki/Q166583","display_name":"Condensation","level":2,"score":0.5583716630935669},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5580033659934998},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.5326074361801147},{"id":"https://openalex.org/C2182769","wikidata":"https://www.wikidata.org/wiki/Q62500","display_name":"Ionic bonding","level":3,"score":0.514896035194397},{"id":"https://openalex.org/C133386390","wikidata":"https://www.wikidata.org/wiki/Q184996","display_name":"Dielectric","level":2,"score":0.503440797328949},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4726014733314514},{"id":"https://openalex.org/C132439834","wikidata":"https://www.wikidata.org/wiki/Q7559035","display_name":"Solvent effects","level":3,"score":0.4527251720428467},{"id":"https://openalex.org/C2778862431","wikidata":"https://www.wikidata.org/wiki/Q416002","display_name":"Polyacrylamide","level":2,"score":0.44592607021331787},{"id":"https://openalex.org/C115028873","wikidata":"https://www.wikidata.org/wiki/Q3646716","display_name":"DNA condensation","level":4,"score":0.41120046377182007},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.35831448435783386},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.27268850803375244},{"id":"https://openalex.org/C147789679","wikidata":"https://www.wikidata.org/wiki/Q11372","display_name":"Physical chemistry","level":1,"score":0.24038448929786682},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.1990583837032318},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.16976997256278992},{"id":"https://openalex.org/C184651966","wikidata":"https://www.wikidata.org/wiki/Q906356","display_name":"Aqueous solution","level":2,"score":0.16444122791290283},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.06948107481002808},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C49040817","wikidata":"https://www.wikidata.org/wiki/Q193091","display_name":"Optoelectronics","level":1,"score":0.0},{"id":"https://openalex.org/C54009773","wikidata":"https://www.wikidata.org/wiki/Q1429031","display_name":"Transfection","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C145148216","wikidata":"https://www.wikidata.org/wiki/Q36496","display_name":"Ion","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015180","descriptor_name":"Electrophoresis, Gel, Two-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/ja0303337","doi":"https://doi.org/10.1021/ja0303337","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ja0303337","pdf_url":null,"source":{"id":"https://openalex.org/S111155417","display_name":"Journal of the American Chemical Society","issn_l":"0002-7863","issn":["0002-7863","1520-5126","1943-2984"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Chemical Society","raw_type":"journal-article"},{"id":"pmid:16220913","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16220913","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Chemical Society","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320308357","display_name":"Boston College","ror":"https://ror.org/02n2fzt79"},{"id":"https://openalex.org/F4320309622","display_name":"Harvard University","ror":"https://ror.org/03vek6s52"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1969104913","https://openalex.org/W2024113824","https://openalex.org/W2049078791","https://openalex.org/W2049807819","https://openalex.org/W2077742393","https://openalex.org/W2081247943","https://openalex.org/W2088165413","https://openalex.org/W2092076020","https://openalex.org/W2092236701","https://openalex.org/W2099263201","https://openalex.org/W2102834112","https://openalex.org/W2144830514","https://openalex.org/W2282201039"],"related_works":["https://openalex.org/W2032720260","https://openalex.org/W1969104913","https://openalex.org/W2026049876","https://openalex.org/W2001725243","https://openalex.org/W1969792194","https://openalex.org/W2129609646","https://openalex.org/W1991654547","https://openalex.org/W2152330599","https://openalex.org/W2144830514","https://openalex.org/W1605927417"],"abstract_inverted_index":{"We":[0,87],"have":[1,66],"developed":[2],"a":[3,69],"quantitative":[4],"predictive":[5],"model":[6,23],"capable":[7],"of":[8,12,14,29,34,39,46,53,58,76,84],"describing":[9],"the":[10,47,74,77],"dynamics":[11],"migration":[13,83],"intrinsically":[15],"curved":[16],"DNA":[17],"fragments":[18],"on":[19,73,81],"polyacrylamide":[20],"gels.":[21],"The":[22],"takes":[24],"into":[25],"account":[26],"structural":[27,44],"features":[28],"DNA,":[30],"end-to-end":[31],"distance,":[32],"screening":[33],"hydrodynamic":[35],"interactions,":[36],"ionic":[37],"strength":[38],"buffer,":[40],"electrostatic":[41],"persistence":[42],"length,":[43],"fluctuations":[45],"macromolecule,":[48],"counter":[49],"condensation,":[50],"and":[51,56,99],"variation":[52],"dielectric":[54],"constant":[55],"viscosity":[57],"water":[59],"with":[60,97],"MPD.":[61],"In":[62],"doing":[63],"so,":[64],"we":[65],"also":[67],"addressed":[68],"decade":[70],"old":[71],"issue":[72],"effect":[75],"organic":[78],"solvent":[79],"2-methyl-2,4-pentanediol":[80],"gel":[82],"phased":[85],"A-tracts.":[86],"show":[88],"here":[89],"that":[90],"A-tract-solvent":[91],"interactions":[92],"are":[93],"less":[94],"favored":[95],"compared":[96],"A-tract-A-tract":[98],"solvent-solvent":[100],"interactions.":[101]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
