{"id":"https://openalex.org/W2003969488","doi":"https://doi.org/10.1111/jam.12829","title":"Effect of donor animal species and their feeding on the composition of the microbial community establishing in a rumen simulation","display_name":"Effect of donor animal species and their feeding on the composition of the microbial community establishing in a rumen simulation","publication_year":2015,"publication_date":"2015-04-16","ids":{"openalex":"https://openalex.org/W2003969488","doi":"https://doi.org/10.1111/jam.12829","mag":"2003969488","pmid":"https://pubmed.ncbi.nlm.nih.gov/25879255"},"language":"en","primary_location":{"id":"doi:10.1111/jam.12829","doi":"https://doi.org/10.1111/jam.12829","is_oa":false,"landing_page_url":"https://doi.org/10.1111/jam.12829","pdf_url":null,"source":{"id":"https://openalex.org/S39794811","display_name":"Journal of Applied Microbiology","issn_l":"1364-5072","issn":["1364-5072","1365-2672"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Applied Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078187703","display_name":"Maren Witzig","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I110079840","display_name":"University of Hohenheim","ror":"https://ror.org/00b1c9541","country_code":"DE","type":"education","lineage":["https://openalex.org/I110079840"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"M. Witzig","raw_affiliation_strings":["Institut f\u00fcr Nutztierwissenschaften; Universit\u00e4t Hohenheim; Stuttgart Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Nutztierwissenschaften; Universit\u00e4t Hohenheim; Stuttgart Germany","institution_ids":["https://openalex.org/I110079840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010074789","display_name":"J. Boguhn","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I110079840","display_name":"University of Hohenheim","ror":"https://ror.org/00b1c9541","country_code":"DE","type":"education","lineage":["https://openalex.org/I110079840"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J. Boguhn","raw_affiliation_strings":["Institut f\u00fcr Nutztierwissenschaften; Universit\u00e4t Hohenheim; Stuttgart Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Nutztierwissenschaften; Universit\u00e4t Hohenheim; Stuttgart Germany","institution_ids":["https://openalex.org/I110079840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069733143","display_name":"Michael Zeder","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Zeder","raw_affiliation_strings":["Technobiology GmbH; Buchrain Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technobiology GmbH; Buchrain Switzerland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035474246","display_name":"Jana Seifert","orcid":"https://orcid.org/0000-0002-7690-8539","observed_orcids":["https://orcid.org/0000-0002-7690-8539"]},"institutions":[{"id":"https://openalex.org/I110079840","display_name":"University of Hohenheim","ror":"https://ror.org/00b1c9541","country_code":"DE","type":"education","lineage":["https://openalex.org/I110079840"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J. Seifert","raw_affiliation_strings":["Institut f\u00fcr Nutztierwissenschaften; Universit\u00e4t Hohenheim; Stuttgart Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Nutztierwissenschaften; Universit\u00e4t Hohenheim; Stuttgart Germany","institution_ids":["https://openalex.org/I110079840"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063826105","display_name":"M. Rodehutscord","orcid":"https://orcid.org/0000-0003-3156-7889","observed_orcids":["https://orcid.org/0000-0003-3156-7889"]},"institutions":[{"id":"https://openalex.org/I110079840","display_name":"University of Hohenheim","ror":"https://ror.org/00b1c9541","country_code":"DE","type":"education","lineage":["https://openalex.org/I110079840"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Rodehutscord","raw_affiliation_strings":["Institut f\u00fcr Nutztierwissenschaften; Universit\u00e4t Hohenheim; Stuttgart Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Nutztierwissenschaften; Universit\u00e4t Hohenheim; Stuttgart Germany","institution_ids":["https://openalex.org/I110079840"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5078187703"],"corresponding_institution_ids":["https://openalex.org/I110079840"],"apc_list":{"value":2864,"currency":"GBP","value_usd":3777},"apc_paid":null,"fwci":1.9234,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.84188152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":96},"biblio":{"volume":"119","issue":"1","first_page":"33","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10098","display_name":"Ruminant Nutrition and Digestive Physiology","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10098","display_name":"Ruminant Nutrition and Digestive Physiology","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10284","display_name":"Anaerobic Digestion and Biogas Production","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10152","display_name":"Animal Nutrition and Physiology","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rumen-microbiota","display_name":"rumen microbiota","score":0.9649999737739563},{"id":"https://openalex.org/keywords/rumen-simulation","display_name":"rumen simulation","score":0.777999997138977},{"id":"https://openalex.org/keywords/sheep","display_name":"sheep","score":0.5830000042915344},{"id":"https://openalex.org/keywords/cattle","display_name":"cattle","score":0.7570000290870667},{"id":"https://openalex.org/keywords/maize-silage","display_name":"corn silage","score":0.8299999833106995},{"id":"https://openalex.org/keywords/grass-silage","display_name":"grass silage","score":1.0},{"id":"https://openalex.org/keywords/bacteroidetes","display_name":"Bacteroidetes","score":0.8349999785423279},{"id":"https://openalex.org/keywords/deltaproteobacteria","display_name":"Deltaproteobacteria","score":0.9470000267028809},{"id":"https://openalex.org/keywords/methanobacteriaceae","display_name":"Methanobacteriaceae","score":0.9480000138282776},{"id":"https://openalex.org/keywords/archaea","display_name":"archaea","score":0.7979999780654907},{"id":"https://openalex.org/keywords/in-vitro-rumen-incubation","display_name":"in vitro rumen incubation","score":0.5709999799728394},{"id":"https://openalex.org/keywords/microbial-community-composition","display_name":"microbial community composition","score":0.5740000009536743}],"concepts":[{"id":"https://openalex.org/C70262065","wikidata":"https://www.wikidata.org/wiki/Q427652","display_name":"Rumen","level":3,"score":0.9258469939231873},{"id":"https://openalex.org/C40231798","wikidata":"https://www.wikidata.org/wiki/Q1333743","display_name":"Composition (language)","level":2,"score":0.6535746455192566},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.5066292881965637},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.5058300495147705},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44189196825027466},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4396040439605713},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3615461587905884},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.32499080896377563},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3127031922340393},{"id":"https://openalex.org/C100544194","wikidata":"https://www.wikidata.org/wiki/Q41760","display_name":"Fermentation","level":2,"score":0.11233717203140259},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000821","descriptor_name":"Animal Feed","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003313","descriptor_name":"Zea mays","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006109","descriptor_name":"Poaceae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012417","descriptor_name":"Rumen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012417","descriptor_name":"Rumen","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D012756","descriptor_name":"Sheep","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012820","descriptor_name":"Silage","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012820","descriptor_name":"Silage","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1111/jam.12829","doi":"https://doi.org/10.1111/jam.12829","is_oa":false,"landing_page_url":"https://doi.org/10.1111/jam.12829","pdf_url":null,"source":{"id":"https://openalex.org/S39794811","display_name":"Journal of Applied Microbiology","issn_l":"1364-5072","issn":["1364-5072","1365-2672"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Applied Microbiology","raw_type":"journal-article"},{"id":"pmid:25879255","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25879255","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of applied microbiology","raw_type":"Comparative Study"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.6875,"display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W57815622","https://openalex.org/W107987941","https://openalex.org/W346827628","https://openalex.org/W1022202987","https://openalex.org/W1480945384","https://openalex.org/W1493599431","https://openalex.org/W1515752006","https://openalex.org/W1519909963","https://openalex.org/W1549692422","https://openalex.org/W1602497338","https://openalex.org/W1701869895","https://openalex.org/W1825474916","https://openalex.org/W1849286174","https://openalex.org/W1870562488","https://openalex.org/W1985853534","https://openalex.org/W1997748083","https://openalex.org/W1998170370","https://openalex.org/W1998989320","https://openalex.org/W2002525584","https://openalex.org/W2009142674","https://openalex.org/W2014680134","https://openalex.org/W2023131575","https://openalex.org/W2023674675","https://openalex.org/W2033836838","https://openalex.org/W2036146859","https://openalex.org/W2040701224","https://openalex.org/W2042473229","https://openalex.org/W2047341547","https://openalex.org/W2048055898","https://openalex.org/W2050765049","https://openalex.org/W2067297267","https://openalex.org/W2067421327","https://openalex.org/W2068585589","https://openalex.org/W2083170339","https://openalex.org/W2084944011","https://openalex.org/W2087580548","https://openalex.org/W2100211522","https://openalex.org/W2103739116","https://openalex.org/W2106052268","https://openalex.org/W2110544549","https://openalex.org/W2126862456","https://openalex.org/W2131114862","https://openalex.org/W2135256281","https://openalex.org/W2135526183","https://openalex.org/W2148837646","https://openalex.org/W2156255246","https://openalex.org/W2157970685","https://openalex.org/W2163019339","https://openalex.org/W2341421605","https://openalex.org/W2401206769"],"related_works":["https://openalex.org/W2290307730","https://openalex.org/W2884055670","https://openalex.org/W1968977542","https://openalex.org/W1739716763","https://openalex.org/W2107886297","https://openalex.org/W2504809013","https://openalex.org/W2746035652","https://openalex.org/W4400760652","https://openalex.org/W7170286904","https://openalex.org/W1602497338"],"abstract_inverted_index":{"AIMS:":[0],"To":[1],"investigate":[2],"the":[3,13,16,108,155,162,184,189,192,208,216,230,233],"effect":[4,153],"of":[5,15,19,56,89,98,107,113,129,145,154,164,179,191,210,232],"donor":[6,109,156,180,243],"animal":[7,157,185],"species":[8,158,186],"and":[9,42,58,64,73,77,102,141],"their":[10],"feeding":[11,106,124,178],"on":[12,229],"composition":[14,190,231],"active":[17],"fraction":[18],"rumen":[20,217,221],"microbiota":[21,218],"established":[22],"during":[23],"in":[24,83,131,149,167,198,219],"vitro":[25,168],"experiments":[26,35],"with":[27,38,53,62,67,134],"different":[28,238],"forages.":[29],"METHODS":[30],"AND":[31,201],"RESULTS:":[32],"Rumen":[33],"simulation":[34],"were":[36,51,79,93,115,119,147],"conducted":[37],"maize":[39],"silage":[40,44],"(MS)":[41],"grass":[43],"(GS)":[45],"as":[46],"substrates.":[47],"Four":[48],"experimental":[49],"runs":[50],"performed":[52],"ruminal":[54,193,234],"contents":[55],"sheep":[57,172],"cows":[59],"fed":[60,241],"either":[61],"hay":[63],"concentrate":[65],"or":[66,69],"MS":[68,150],"GS,":[70],"respectively.":[71],"Liquid-":[72],"solid-associated":[74],"microbes":[75],"(LAM":[76],"SAM)":[78],"fixed":[80],"for":[81,121,171,174,214],"fluorescence":[82],"situ":[84],"hybridization":[85],"after":[86],"14":[87],"days":[88],"incubation.":[90],"The":[91,152,177],"LAM":[92],"characterized":[94],"by":[95],"higher":[96,127,170],"proportions":[97],"Lachnospiraceae,":[99],"Bacteroidetes,":[100,139],"Deltaproteobacteria":[101,140],"Methanobacteriaceae":[103],"at":[104],"hay-concentrate-based":[105],"animals":[110],"whereas":[111,143],"counts":[112],"Gammaproteobacteria":[114,146],"lower.":[116],"Similar":[117],"results":[118],"found":[120],"SAM.":[122,132],"Hay-concentrate-based":[123],"caused":[125],"a":[126,211,220],"ratio":[128],"Bacteria:Archaea":[130],"Incubations":[133],"GS":[135],"seemed":[136],"to":[137,161,242],"enhance":[138],"Archaea":[142,165],"numbers":[144],"enhanced":[148],"experiments.":[151],"was":[159],"limited":[160],"number":[163],"establishing":[166],"being":[169],"than":[173,183],"cows.":[175],"CONCLUSIONS:":[176],"animals,":[181],"more":[182],"itself,":[187],"affects":[188],"microbial":[194,235],"community":[195,236],"that":[196],"establishes":[197],"vitro.":[199],"SIGNIFICANCE":[200],"IMPACT":[202],"OF":[203],"THE":[204],"STUDY:":[205],"Data":[206],"suggest":[207],"need":[209],"standardized":[212],"approach":[213],"studying":[215],"simulation.":[222],"Moreover,":[223],"this":[224],"study":[225],"provides":[226],"fundamental":[227],"data":[228],"when":[237],"diets":[239],"are":[240],"animals.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":2}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}