{"id":"https://openalex.org/W2002306289","doi":"https://doi.org/10.1104/pp.107.108852","title":"Recurrent Deletions of Puroindoline Genes at the GrainHardnessLocus in Four Independent Lineages of Polyploid Wheat","display_name":"Recurrent Deletions of Puroindoline Genes at the GrainHardnessLocus in Four Independent Lineages of Polyploid Wheat","publication_year":2007,"publication_date":"2007-11-16","ids":{"openalex":"https://openalex.org/W2002306289","doi":"https://doi.org/10.1104/pp.107.108852","mag":"2002306289","pmid":"https://pubmed.ncbi.nlm.nih.gov/18024553","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/2230614"},"language":"en","primary_location":{"id":"doi:10.1104/pp.107.108852","doi":"https://doi.org/10.1104/pp.107.108852","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.107.108852","pdf_url":"https://academic.oup.com/plphys/article-pdf/146/1/200/37072073/plphys_v146_1_200.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/plphys/article-pdf/146/1/200/37072073/plphys_v146_1_200.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005172019","display_name":"Wanlong Li","orcid":"https://orcid.org/0000-0001-5886-1426","observed_orcids":["https://orcid.org/0000-0001-5886-1426"]},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wanlong Li","raw_affiliation_strings":["Wheat Genetic and Genomic Resources Center, Department of Plant Pathology, Kansas State University, Manhattan, Kansas 66506\u20135502"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wheat Genetic and Genomic Resources Center, Department of Plant Pathology, Kansas State University, Manhattan, Kansas 66506\u20135502","institution_ids":["https://openalex.org/I189590672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069345263","display_name":"Li Huang","orcid":"https://orcid.org/0000-0002-4874-0898","observed_orcids":["https://orcid.org/0000-0002-4874-0898"]},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Li Huang","raw_affiliation_strings":["Wheat Genetic and Genomic Resources Center, Department of Plant Pathology, Kansas State University, Manhattan, Kansas 66506\u20135502"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wheat Genetic and Genomic Resources Center, Department of Plant Pathology, Kansas State University, Manhattan, Kansas 66506\u20135502","institution_ids":["https://openalex.org/I189590672"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008626798","display_name":"Bikram Singh Gill","orcid":"https://orcid.org/0000-0003-4510-9459","observed_orcids":["https://orcid.org/0000-0003-4510-9459"]},"institutions":[{"id":"https://openalex.org/I189590672","display_name":"Kansas State University","ror":"https://ror.org/05p1j8758","country_code":"US","type":"education","lineage":["https://openalex.org/I189590672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bikram S. Gill","raw_affiliation_strings":["Wheat Genetic and Genomic Resources Center, Department of Plant Pathology, Kansas State University, Manhattan, Kansas 66506\u20135502"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wheat Genetic and Genomic Resources Center, Department of Plant Pathology, Kansas State University, Manhattan, Kansas 66506\u20135502","institution_ids":["https://openalex.org/I189590672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I189590672"],"apc_list":{"value":3851,"currency":"USD","value_usd":3851},"apc_paid":{"value":3851,"currency":"USD","value_usd":3851},"fwci":6.1765,"has_fulltext":true,"cited_by_count":66,"citation_normalized_percentile":{"value":0.95809623,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"146","issue":"1","first_page":"200","last_page":"212"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.8964999914169312,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.8964999914169312,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.10270000249147415,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/puroindoline-genes","display_name":"puroindoline genes","score":0.7760000228881836},{"id":"https://openalex.org/keywords/pina","display_name":"Pina","score":0.7730000019073486},{"id":"https://openalex.org/keywords/polyploidy","display_name":"polyploidy","score":0.9089999794960022},{"id":"https://openalex.org/keywords/wheat-evolution","display_name":"wheat evolution","score":0.4749999940395355},{"id":"https://openalex.org/keywords/wheat","display_name":"wheat","score":0.7549999952316284},{"id":"https://openalex.org/keywords/triticum-timopheevii","display_name":"Triticum timopheevii","score":0.9570000171661377},{"id":"https://openalex.org/keywords/aegilops","display_name":"Aegilops","score":0.9890000224113464},{"id":"https://openalex.org/keywords/deletion-breakpoints","display_name":"deletion breakpoints","score":0.6909999847412109},{"id":"https://openalex.org/keywords/grain-texture","display_name":"grain texture","score":0.6209999918937683},{"id":"https://openalex.org/keywords/genome-evolution","display_name":"genome evolution","score":0.5830000042915344}],"concepts":[{"id":"https://openalex.org/C2776626444","wikidata":"https://www.wikidata.org/wiki/Q213410","display_name":"Polyploid","level":4,"score":0.7956664562225342},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.7502726316452026},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6113382577896118},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5955134630203247},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5295233130455017},{"id":"https://openalex.org/C143191323","wikidata":"https://www.wikidata.org/wiki/Q118406","display_name":"Ploidy","level":3,"score":0.5125682353973389},{"id":"https://openalex.org/C3020060512","wikidata":"https://www.wikidata.org/wiki/Q15645384","display_name":"Wheat grain","level":2,"score":0.5000436305999756},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.11722156405448914}],"mesh":[{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006244","descriptor_name":"Hardness","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012639","descriptor_name":"Seeds","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012639","descriptor_name":"Seeds","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1104/pp.107.108852","doi":"https://doi.org/10.1104/pp.107.108852","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.107.108852","pdf_url":"https://academic.oup.com/plphys/article-pdf/146/1/200/37072073/plphys_v146_1_200.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},{"id":"pmid:18024553","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18024553","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant physiology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2230614","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC2230614/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1104/pp.107.108852","doi":"https://doi.org/10.1104/pp.107.108852","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.107.108852","pdf_url":"https://academic.oup.com/plphys/article-pdf/146/1/200/37072073/plphys_v146_1_200.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.6875,"display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320317984","display_name":"Kansas Wheat Commission","ror":"https://ror.org/04m6tvf27"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2002306289.pdf","grobid_xml":"https://content.openalex.org/works/W2002306289.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W17748650","https://openalex.org/W159717988","https://openalex.org/W203555713","https://openalex.org/W236678971","https://openalex.org/W365037783","https://openalex.org/W620898706","https://openalex.org/W1844998189","https://openalex.org/W1965309806","https://openalex.org/W1967655325","https://openalex.org/W1972429283","https://openalex.org/W1987637262","https://openalex.org/W2003612874","https://openalex.org/W2008011991","https://openalex.org/W2009289958","https://openalex.org/W2013892862","https://openalex.org/W2016917421","https://openalex.org/W2017229944","https://openalex.org/W2025568054","https://openalex.org/W2027423489","https://openalex.org/W2030272179","https://openalex.org/W2030357407","https://openalex.org/W2034620273","https://openalex.org/W2041599439","https://openalex.org/W2043853243","https://openalex.org/W2048419141","https://openalex.org/W2049347753","https://openalex.org/W2061675790","https://openalex.org/W2066320476","https://openalex.org/W2080932686","https://openalex.org/W2084419708","https://openalex.org/W2086278655","https://openalex.org/W2091993575","https://openalex.org/W2094971410","https://openalex.org/W2109055289","https://openalex.org/W2113125314","https://openalex.org/W2113409229","https://openalex.org/W2116281723","https://openalex.org/W2120357934","https://openalex.org/W2120922126","https://openalex.org/W2138260259","https://openalex.org/W2138778785","https://openalex.org/W2139007029","https://openalex.org/W2141530270","https://openalex.org/W2152620301","https://openalex.org/W2157430829","https://openalex.org/W2164075646","https://openalex.org/W2164107696","https://openalex.org/W2164969758","https://openalex.org/W2166192781","https://openalex.org/W2166265186","https://openalex.org/W2167914707","https://openalex.org/W2172004139","https://openalex.org/W2186961801","https://openalex.org/W2261492977","https://openalex.org/W2349198492","https://openalex.org/W2610391446","https://openalex.org/W3208338597"],"related_works":["https://openalex.org/W2120357934","https://openalex.org/W3011425713","https://openalex.org/W1985267414","https://openalex.org/W2043171917","https://openalex.org/W7095294839","https://openalex.org/W2972578404","https://openalex.org/W2135454472","https://openalex.org/W1772193102","https://openalex.org/W2011758694","https://openalex.org/W2464290538"],"abstract_inverted_index":{"Polyploidy":[0],"is":[1,12,22],"known":[2,13],"to":[3],"induce":[4],"numerous":[5],"genetic":[6],"and":[7,36,52,83,89,100,109,129,150,180,198,200],"epigenetic":[8],"changes":[9],"but":[10,46,137,158],"little":[11],"about":[14],"their":[15],"physiological":[16,203],"bases.":[17],"In":[18],"wheat,":[19],"grain":[20],"texture":[21],"mainly":[23],"determined":[24],"by":[25],"the":[26,50,63,76,112,134,140,155,161,175,183],"Hardness":[27],"(Ha)":[28],"locus":[29],"consisting":[30],"of":[31,55,66,71,87,111,143,164,170,190,196],"genes":[32,40,93],"Puroindoline":[33],"a":[34],"(Pina)":[35],"b":[37],"(Pinb).":[38],"These":[39],"are":[41,205],"conserved":[42,95],"in":[43,68,80,96,105,122,139,160,182],"diploid":[44,82,98],"progenitors":[45],"were":[47,94,103,120,131,152],"deleted":[48,153],"from":[49,133,154],"A":[51,141,156],"B":[53],"genomes":[54],"tetraploid":[56,144],"Triticum":[57,88,108,145,166],"turgidum":[58],"(AB).":[59],"We":[60,74],"now":[61],"report":[62],"recurrent":[64],"deletions":[65,192],"Pina-Pinb":[67,117,176,191],"other":[69],"lineages":[70],"polyploid":[72,85,107,113,185],"wheat.":[73],"analyzed":[75],"Ha":[77],"haplotype":[78],"structure":[79],"90":[81],"300":[84],"accessions":[86],"Aegilops":[90,114],"spp.":[91,115],"Pin":[92],"all":[97,106],"species":[99],"deletion":[101,118,171,177],"haplotypes":[102,119],"detected":[104],"most":[110],"Two":[116],"found":[121],"hexaploid":[123,165],"wheat":[124,186],"(Triticum":[125],"aestivum;":[126],"ABD).":[127],"Pina":[128,149],"Pinb":[130,151],"eliminated":[132],"G":[135],"genome,":[136],"maintained":[138],"genome":[142,157,163,199],"timopheevii":[146],"(AG).":[147],"Subsequently,":[148],"retained":[159],"A(m)":[162],"zhukovskyi":[167],"(A(m)AG).":[168],"Comparison":[169],"breakpoints":[172],"demonstrated":[173],"that":[174],"occurred":[178],"independently":[179],"recurrently":[181],"four":[184],"species.":[187],"The":[188],"implications":[189],"for":[193],"polyploid-driven":[194],"evolution":[195],"gene":[197],"its":[201],"possible":[202],"significance":[204],"discussed.":[206]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":5}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}
