{"id":"https://openalex.org/W2000807355","doi":"https://doi.org/10.6026/97320630003394","title":"A molecular model for diacylglycerol acyltransferase from Mortierella ramanniana var. angulispora","display_name":"A molecular model for diacylglycerol acyltransferase from Mortierella ramanniana var. angulispora","publication_year":2009,"publication_date":"2009-05-04","ids":{"openalex":"https://openalex.org/W2000807355","doi":"https://doi.org/10.6026/97320630003394","mag":"2000807355","pmid":"https://pubmed.ncbi.nlm.nih.gov/19759814","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732034"},"language":"en","primary_location":{"id":"doi:10.6026/97320630003394","doi":"https://doi.org/10.6026/97320630003394","is_oa":true,"landing_page_url":"https://doi.org/10.6026/97320630003394","pdf_url":"http://www.bioinformation.net/003/008700032009.pdf","source":{"id":"https://openalex.org/S2755911950","display_name":"Bioinformation","issn_l":"0973-2063","issn":["0973-2063","0973-8894"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","ki-jl-1","norway-1","poland-20","russia-white-list-2"],"host_organization":"https://openalex.org/P4328143488","host_organization_name":"Biomedical Informatics","host_organization_lineage":["https://openalex.org/P4328143488"],"host_organization_lineage_names":["Biomedical Informatics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformation","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"http://www.bioinformation.net/003/008700032009.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101659107","display_name":"S. K. Mishra","orcid":"https://orcid.org/0000-0001-8522-0106","observed_orcids":["https://orcid.org/0000-0001-8522-0106","https://orcid.org/0000-0002-1647-3625","https://orcid.org/0009-0005-0921-6806"]},"institutions":[{"id":"https://openalex.org/I2801192375","display_name":"IFTM University","ror":"https://ror.org/02v2sn747","country_code":"IN","type":"education","lineage":["https://openalex.org/I2801192375"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Sanjay Mishra","raw_affiliation_strings":["Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India. sanjaymishra66@gmail.com","Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India. sanjaymishra66@gmail.com","institution_ids":["https://openalex.org/I2801192375"]},{"raw_affiliation_string":"Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India","institution_ids":["https://openalex.org/I2801192375"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005127739","display_name":"Surya Prakash Dwivedi","orcid":"https://orcid.org/0000-0002-0294-5898","observed_orcids":["https://orcid.org/0000-0002-0294-5898"]},"institutions":[{"id":"https://openalex.org/I2801192375","display_name":"IFTM University","ror":"https://ror.org/02v2sn747","country_code":"IN","type":"education","lineage":["https://openalex.org/I2801192375"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Surya Prakash Dwivedi","raw_affiliation_strings":["Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India;","institution_ids":["https://openalex.org/I2801192375"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002980573","display_name":"Neeraja Dwivedi","orcid":"https://orcid.org/0000-0003-0194-1630","observed_orcids":["https://orcid.org/0000-0003-0194-1630"]},"institutions":[{"id":"https://openalex.org/I2801192375","display_name":"IFTM University","ror":"https://ror.org/02v2sn747","country_code":"IN","type":"education","lineage":["https://openalex.org/I2801192375"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Neeraja Dwivedi","raw_affiliation_strings":["Department of Biotechnology , College of Engineering and Technology , IFTM Campus , Lodhipur-Rajput , Delhi Road , Moradabad 244 001 , U.P. , India;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology , College of Engineering and Technology , IFTM Campus , Lodhipur-Rajput , Delhi Road , Moradabad 244 001 , U.P. , India;","institution_ids":["https://openalex.org/I2801192375"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ajay Kumar","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I2801192375","display_name":"IFTM University","ror":"https://ror.org/02v2sn747","country_code":"IN","type":"education","lineage":["https://openalex.org/I2801192375"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ajay Kumar","raw_affiliation_strings":["Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India;","institution_ids":["https://openalex.org/I2801192375"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091767615","display_name":"Anil Rawat","orcid":"https://orcid.org/0000-0001-9877-9283","observed_orcids":["https://orcid.org/0000-0001-9877-9283"]},"institutions":[{"id":"https://openalex.org/I2801192375","display_name":"IFTM University","ror":"https://ror.org/02v2sn747","country_code":"IN","type":"education","lineage":["https://openalex.org/I2801192375"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anil Rawat","raw_affiliation_strings":["Bioinformatics Laboratory, Biobranz Institute, Lucknow 226 001, U.P., India;","Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Biobranz Institute, Lucknow 226 001, U.P., India;","institution_ids":[]},{"raw_affiliation_string":"Department of Biotechnology, College of Engineering and Technology, IFTM Campus, Lodhipur-Rajput, Delhi Road, Moradabad 244 001, U.P., India;","institution_ids":["https://openalex.org/I2801192375"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110004418","display_name":"Yasushi Kamisaka","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yasushi Kamisaka","raw_affiliation_strings":["Lipid Engineering Research Group Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-8566 Japan;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lipid Engineering Research Group Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-8566 Japan;","institution_ids":["https://openalex.org/I73613424"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101659107"],"corresponding_institution_ids":["https://openalex.org/I2801192375"],"apc_list":null,"apc_paid":null,"fwci":0.1527,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48675867,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"3","issue":"9","first_page":"394","last_page":"398"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11844","display_name":"Lipid metabolism and biosynthesis","score":0.5210000276565552,"subfield":{"id":"https://openalex.org/subfields/1303","display_name":"Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11844","display_name":"Lipid metabolism and biosynthesis","score":0.5210000276565552,"subfield":{"id":"https://openalex.org/subfields/1303","display_name":"Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.36230000853538513,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.07100000232458115,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/diacylglycerol-acyltransferase","display_name":"diacylglycerol acyltransferase","score":0.9789999723434448},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"protein structure prediction","score":0.5529999732971191},{"id":"https://openalex.org/keywords/template-based-modeling","display_name":"template-based modeling","score":0.5770000219345093},{"id":"https://openalex.org/keywords/triacylglycerol-biosynthesis","display_name":"triglyceride synthesis","score":0.8429999947547913},{"id":"https://openalex.org/keywords/diacylglycerol-metabolism","display_name":"diacylglycerol metabolism","score":0.9800000190734863},{"id":"https://openalex.org/keywords/inhibitor-binding","display_name":"inhibitor binding","score":0.7950000166893005},{"id":"https://openalex.org/keywords/sphingosine","display_name":"sphingosine","score":0.9559999704360962},{"id":"https://openalex.org/keywords/trifluoperazine","display_name":"trifluoperazine","score":0.9470000267028809},{"id":"https://openalex.org/keywords/phosphatidic-acid","display_name":"phosphatidic acid","score":0.9309999942779541},{"id":"https://openalex.org/keywords/lysophosphatidylserine","display_name":"lysophosphatidylserine","score":0.9860000014305115},{"id":"https://openalex.org/keywords/molecular-docking","display_name":"molecular docking","score":0.550000011920929}],"concepts":[{"id":"https://openalex.org/C36020004","wikidata":"https://www.wikidata.org/wiki/Q106951674","display_name":"Diacylglycerol kinase","level":4,"score":0.8437954187393188},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.8247758150100708},{"id":"https://openalex.org/C193153401","wikidata":"https://www.wikidata.org/wiki/Q3859815","display_name":"MODELLER","level":4,"score":0.48431912064552307},{"id":"https://openalex.org/C2910079589","wikidata":"https://www.wikidata.org/wiki/Q2609152","display_name":"Acyltransferases","level":4,"score":0.4670013189315796},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.44965246319770813},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.42347317934036255},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.41063764691352844},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4062996208667755},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.33447331190109253},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2629384994506836},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.20742756128311157},{"id":"https://openalex.org/C553450214","wikidata":"https://www.wikidata.org/wiki/Q851162","display_name":"Biosynthesis","level":3,"score":0.06950551271438599},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C195794163","wikidata":"https://www.wikidata.org/wiki/Q420877","display_name":"Protein kinase C","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.6026/97320630003394","doi":"https://doi.org/10.6026/97320630003394","is_oa":true,"landing_page_url":"https://doi.org/10.6026/97320630003394","pdf_url":"http://www.bioinformation.net/003/008700032009.pdf","source":{"id":"https://openalex.org/S2755911950","display_name":"Bioinformation","issn_l":"0973-2063","issn":["0973-2063","0973-8894"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","ki-jl-1","norway-1","poland-20","russia-white-list-2"],"host_organization":"https://openalex.org/P4328143488","host_organization_name":"Biomedical Informatics","host_organization_lineage":["https://openalex.org/P4328143488"],"host_organization_lineage_names":["Biomedical Informatics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformation","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2732034","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2732034","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformation","raw_type":"Text"},{"id":"pmid:19759814","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19759814","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformation","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.6026/97320630003394","doi":"https://doi.org/10.6026/97320630003394","is_oa":true,"landing_page_url":"https://doi.org/10.6026/97320630003394","pdf_url":"http://www.bioinformation.net/003/008700032009.pdf","source":{"id":"https://openalex.org/S2755911950","display_name":"Bioinformation","issn_l":"0973-2063","issn":["0973-2063","0973-8894"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","ki-jl-1","norway-1","poland-20","russia-white-list-2"],"host_organization":"https://openalex.org/P4328143488","host_organization_name":"Biomedical Informatics","host_organization_lineage":["https://openalex.org/P4328143488"],"host_organization_lineage_names":["Biomedical Informatics"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformation","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2000807355.pdf","grobid_xml":"https://content.openalex.org/works/W2000807355.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W583087857","https://openalex.org/W2911235422","https://openalex.org/W4300500729"],"related_works":["https://openalex.org/W2055980308","https://openalex.org/W2885485140","https://openalex.org/W2004718580","https://openalex.org/W4234292956","https://openalex.org/W2011647937","https://openalex.org/W4284994607","https://openalex.org/W2163357966","https://openalex.org/W7100013407","https://openalex.org/W2106515863","https://openalex.org/W2792682011"],"abstract_inverted_index":{"Acyl":[0],"CoA":[1,33],"diacylglycerol":[2,15,29,40],"acyltransferase":[3],"(DGAT,":[4],"EC":[5],"2.3.120)":[6],"is":[7,60,119,160],"recognized":[8],"as":[9,34],"a":[10,58,77],"key":[11],"player":[12],"of":[13,39,70,105,150,156],"cellular":[14],"metabolism.":[16],"It":[17],"catalyzes":[18],"the":[19,22,103,153],"terminal,":[20],"yet":[21,62],"committed":[23],"step":[24],"in":[25,45],"triacylglycerol":[26],"synthesis":[27],"using":[28,76,113,142],"and":[30,116],"fatty":[31],"acyl":[32],"substrates.":[35],"The":[36,67,97,122,148],"protein":[37,117,126,154],"sequence":[38],"acyltransferse":[41],"(DGAT)":[42],"Type":[43,72],"2B":[44,73,125,159],"Moretierella":[46],"ramanniana":[47],"var.":[48],"angulispora":[49],"(Protein_ID":[50],"=":[51],"AAK84180.1)":[52],"was":[53,74,111,128],"retrieved":[54],"from":[55,84,107],"GenBank.":[56],"However,":[57],"structure":[59,69,79,104],"not":[61],"available":[63],"for":[64],"this":[65],"sequence.":[66],"3D":[68],"DGAT":[71,106,123,157],"modeled":[75],"template":[78,98],"(PDB":[80,99],"ID:":[81,100],"1K30)":[82,101],"obtained":[83],"Protein":[85],"databank":[86],"(PDB)":[87],"identified":[88],"by":[89],"searching":[90],"with":[91,131],"position":[92],"specific":[93],"iterative":[94],"BLAST":[95],"(PSI-BLAST).":[96],"describes":[102],"Cucurbita":[108],"moschata.":[109],"Modeling":[110],"performed":[112],"Modeller":[114],"9v2":[115],"model":[118,127,155],"hence":[120],"generated.":[121],"type":[124,158],"subsequently":[129],"docked":[130],"six":[132],"inhibitors":[133,151],"(sphingosine;":[134],"trifluoroperazine;":[135],"phosphatidic":[136],"acid;":[137],"lysophospatidylserine;":[138],"KCl;":[139],"1,":[140],"2-diolein)":[141],"AutoDock":[143],"(a":[144],"molecular":[145],"docking":[146],"program).":[147],"binding":[149],"to":[152],"discussed.":[161]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2016-06-24T00:00:00"}
