{"id":"https://openalex.org/W2000364228","doi":"https://doi.org/10.1158/1538-7445.am2011-4985","title":"Abstract 4985: The UCSC Cancer Genomics Browser","display_name":"Abstract 4985: The UCSC Cancer Genomics Browser","publication_year":2011,"publication_date":"2011-04-01","ids":{"openalex":"https://openalex.org/W2000364228","doi":"https://doi.org/10.1158/1538-7445.am2011-4985","mag":"2000364228"},"language":"en","primary_location":{"id":"doi:10.1158/1538-7445.am2011-4985","doi":"https://doi.org/10.1158/1538-7445.am2011-4985","is_oa":false,"landing_page_url":"https://doi.org/10.1158/1538-7445.am2011-4985","pdf_url":null,"source":{"id":"https://openalex.org/S168522863","display_name":"Cancer Research","issn_l":"0008-5472","issn":["0008-5472","1538-7445"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320273","host_organization_name":"American Association for Cancer Research","host_organization_lineage":["https://openalex.org/P4310320273"],"host_organization_lineage_names":["American Association for Cancer Research"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cancer Research","raw_type":"journal-article"},"volume":null,"type":"conference-abstract","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059839433","display_name":"Jingchun Zhu","orcid":"https://orcid.org/0000-0003-4075-431X","observed_orcids":["https://orcid.org/0000-0003-4075-431X"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingchun Zhu","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087451504","display_name":"Zack Sanborn","orcid":"https://orcid.org/0000-0003-3573-0014","observed_orcids":["https://orcid.org/0000-0003-3573-0014"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Zachary Sanborn","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007814512","display_name":"Stephen Charles Benz","orcid":"https://orcid.org/0000-0002-4067-0602","observed_orcids":["https://orcid.org/0000-0002-4067-0602"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen C. Benz","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016664317","display_name":"Brian Craft","orcid":"https://orcid.org/0000-0003-3334-6983","observed_orcids":["https://orcid.org/0000-0003-3334-6983"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Craft","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014751238","display_name":"Christopher W. Szeto","orcid":"https://orcid.org/0000-0003-3784-5210","observed_orcids":["https://orcid.org/0000-0003-3784-5210"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Szeto","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039761997","display_name":"Kord M. Kober","orcid":"https://orcid.org/0000-0001-9732-3321","observed_orcids":["https://orcid.org/0000-0001-9732-3321"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kord M. Kober","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062482163","display_name":"Mary J. Goldman","orcid":"https://orcid.org/0000-0002-9808-6388","observed_orcids":["https://orcid.org/0000-0002-9808-6388"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Goldman","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102990929","display_name":"Laurence R. Meyer","orcid":"https://orcid.org/0000-0003-1430-7225","observed_orcids":["https://orcid.org/0000-0003-1430-7225"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laurence Meyer","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045109583","display_name":"Charles Joseph Vaske","orcid":"https://orcid.org/0000-0001-8151-6612","observed_orcids":["https://orcid.org/0000-0001-8151-6612"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Vaske","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035793503","display_name":"Eric Andrew Collisson","orcid":"https://orcid.org/0000-0001-8037-9388","observed_orcids":["https://orcid.org/0000-0001-8037-9388","https://orcid.org/0000-0002-2829-355X"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Collisson","raw_affiliation_strings":["2University of California San Francisco, San Francisco, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2University of California San Francisco, San Francisco, CA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029096739","display_name":"Joshua M. Stuart","orcid":"https://orcid.org/0000-0002-2171-565X","observed_orcids":["https://orcid.org/0000-0002-2171-565X"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Stuart","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090849321","display_name":"David H. Haussler","orcid":"https://orcid.org/0000-0003-1533-4575","observed_orcids":["https://orcid.org/0000-0003-1533-4575"]},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Haussler","raw_affiliation_strings":["1University of California, Santa Cruz, Santa Cruz, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1University of California, Santa Cruz, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"71","issue":"8_Supplement","first_page":"4985","last_page":"4985"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9394999742507935,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9394999742507935,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.020999999716877937,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.008700000122189522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/clinical-data-integration","display_name":"clinical data integration","score":0.5440000295639038},{"id":"https://openalex.org/keywords/the-cancer-genome-atlas","display_name":"TCGA","score":0.7900000214576721},{"id":"https://openalex.org/keywords/ucsc-genome-browser","display_name":"UCSC Genome Browser","score":0.7829999923706055},{"id":"https://openalex.org/keywords/web-based-data-visualization","display_name":"web-based data visualization","score":0.7639999985694885}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.7833038568496704},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6277653574943542},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4817252457141876},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41935789585113525},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41192173957824707},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33177295327186584},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21511751413345337},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18449902534484863},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13718026876449585}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1158/1538-7445.am2011-4985","doi":"https://doi.org/10.1158/1538-7445.am2011-4985","is_oa":false,"landing_page_url":"https://doi.org/10.1158/1538-7445.am2011-4985","pdf_url":null,"source":{"id":"https://openalex.org/S168522863","display_name":"Cancer Research","issn_l":"0008-5472","issn":["0008-5472","1538-7445"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320273","host_organization_name":"American Association for Cancer Research","host_organization_lineage":["https://openalex.org/P4310320273"],"host_organization_lineage_names":["American Association for Cancer Research"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cancer Research","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6240000128746033,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2121362757","https://openalex.org/W2031915964","https://openalex.org/W4234718443","https://openalex.org/W2916022153","https://openalex.org/W2917738795","https://openalex.org/W2322838175","https://openalex.org/W1969361257","https://openalex.org/W2887484107","https://openalex.org/W2954667221","https://openalex.org/W7095959274"],"abstract_inverted_index":{"Abstract":[0],"The":[1,23,97,168],"UCSC":[2,174],"Cancer":[3,120,219,229],"Genomics":[4],"Browser":[5],"(https://genome-cancer.ucsc.edu)":[6],"comprises":[7],"a":[8,100,110],"suite":[9],"of":[10,28,83,103,112,186,196,209,214],"web-based":[11],"tools":[12,88],"to":[13,50,163],"integrate,":[14],"visualize":[15],"and":[16,20,64,80,159,179,189],"analyze":[17],"cancer":[18,106,113,198],"genomics":[19,107,199],"clinical":[21,38,75],"data.":[22,200],"browser":[24,98,128,157,169],"displays":[25],"whole-genome":[26],"views":[27],"genome-wide":[29],"experimental":[30],"measurements":[31],"for":[32,150,218],"multiple":[33],"samples":[34],"alongside":[35],"their":[36],"associated":[37],"information.":[39],"Multiple":[40,124],"datasets":[41],"can":[42,59],"be":[43],"viewed":[44],"simultaneously":[45],"as":[46],"coordinated":[47],"\u201cheatmap":[48],"tracks\u201d":[49],"compare":[51],"across":[52],"studies":[53],"or":[54],"different":[55],"data":[56,66,108,116,132,191],"modalities.":[57],"Users":[58],"order,":[60],"filter,":[61],"aggregate,":[62],"classify,":[63],"display":[65,164],"interactively":[67],"based":[68],"on":[69,129,155],"any":[70,156],"given":[71],"feature":[72],"set":[73,185],"including":[74,115,143],"features,":[76],"annotated":[77],"biological":[78],"pathways,":[79],"user-contributed":[81],"collections":[82],"genes.":[84],"Integrated":[85],"standard":[86],"statistical":[87],"provide":[89],"dynamic":[90],"quantitative":[91],"analysis":[92],"within":[93],"all":[94],"available":[95,105],"datasets.":[96],"hosts":[99],"growing":[101],"body":[102],"publicly":[104],"from":[109,118],"variety":[111],"types,":[114],"generated":[117],"the":[119,127,144,173,181,194,197,210,215],"Genome":[121,175,182],"Atlas":[122],"project.":[123],"consortiums":[125],"use":[126],"confidential":[130],"prepublication":[131],"enabled":[133],"by":[134],"private":[135],"installations.":[136],"Many":[137],"new":[138],"features":[139],"have":[140],"been":[141],"added,":[142],"hgMicroscope":[145],"tumor":[146],"image":[147],"viewer,":[148],"hgSignature":[149],"real-time":[151],"genomic":[152],"signature":[153],"evaluation":[154],"track,":[158],"PARADIGM":[160],"pathway":[161,166],"tracks":[162],"integrative":[165],"activities.":[167],"is":[170],"integrated":[171],"with":[172],"Browser;":[176],"thus":[177],"inheriting":[178],"integrating":[180],"Browser's":[183],"rich":[184],"human":[187],"biology":[188],"genetics":[190],"that":[192],"enhances":[193],"interpretability":[195],"Citation":[201],"Format:":[202],"{Authors}.":[203],"{Abstract":[204],"title}":[205],"[abstract].":[206],"In:":[207],"Proceedings":[208],"102nd":[211],"Annual":[212],"Meeting":[213],"American":[216],"Association":[217],"Research;":[220],"2011":[221],"Apr":[222],"2-6;":[223],"Orlando,":[224],"FL.":[225],"Philadelphia":[226],"(PA):":[227],"AACR;":[228],"Res":[230],"2011;71(8":[231],"Suppl):Abstract":[232],"nr":[233],"4985.":[234],"doi:10.1158/1538-7445.AM2011-4985":[235]},"counts_by_year":[],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2016-06-24T00:00:00"}