{"id":"https://openalex.org/W1998613953","doi":"https://doi.org/10.1002/1097-0282(2002)61:2<121::aid-bip10077>3.0.co;2-1","title":"Thermodynamic databases for proteins and protein-nucleic acid interactions","display_name":"Thermodynamic databases for proteins and protein-nucleic acid interactions","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W1998613953","doi":"https://doi.org/10.1002/1097-0282(2002)61:2<121::aid-bip10077>3.0.co;2-1","mag":"1998613953","pmid":"https://pubmed.ncbi.nlm.nih.gov/11987161"},"language":"en","primary_location":{"id":"doi:10.1002/1097-0282(2002)61:2<121::aid-bip10077>3.0.co;2-1","doi":"https://doi.org/10.1002/1097-0282(2002)61:2<121::aid-bip10077>3.0.co;2-1","is_oa":false,"landing_page_url":"https://doi.org/10.1002/1097-0282(2002)61:2<121::aid-bip10077>3.0.co;2-1","pdf_url":null,"source":{"id":"https://openalex.org/S56808608","display_name":"Biopolymers","issn_l":"0006-3525","issn":["0006-3525","1097-0282"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biopolymers","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033360131","display_name":"Akinori Sarai","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Akinori Sarai","raw_affiliation_strings":["RIKEN Tsukuba Institute, 3-1-1 Koyadai, Ibaraki 305-0074, Japan. sarai@rtc.riken.go.jp","RIKEN Tsukuba Institute, 3\u20101\u20101 Koyadai, Tsukuba, Ibaraki 305\u20100074, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Tsukuba Institute, 3-1-1 Koyadai, Ibaraki 305-0074, Japan. sarai@rtc.riken.go.jp","institution_ids":["https://openalex.org/I4210110652"]},{"raw_affiliation_string":"RIKEN Tsukuba Institute, 3\u20101\u20101 Koyadai, Tsukuba, Ibaraki 305\u20100074, Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046879365","display_name":"M. Michael Gromiha","orcid":"https://orcid.org/0000-0002-1776-4096","observed_orcids":["https://orcid.org/0000-0002-1776-4096"]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Michael Gromiha","raw_affiliation_strings":["RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102887921","display_name":"Jianghong An","orcid":"https://orcid.org/0000-0002-6299-1327","observed_orcids":["https://orcid.org/0000-0002-6299-1327"]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jianghong An","raw_affiliation_strings":["RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019558229","display_name":"Ponraj Prabakaran","orcid":"https://orcid.org/0000-0002-4049-4813","observed_orcids":["https://orcid.org/0000-0002-4049-4813"]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ponraj Prabakaran","raw_affiliation_strings":["RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111810667","display_name":"Samuel Selvaraj","orcid":"https://orcid.org/0009-0001-9768-4247","observed_orcids":["https://orcid.org/0009-0001-9768-4247"]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Samuel Selvaraj","raw_affiliation_strings":["RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080123389","display_name":"Hidetoshi Kono","orcid":"https://orcid.org/0000-0001-5729-8707","observed_orcids":["https://orcid.org/0000-0001-5729-8707"]},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hidetoshi Kono","raw_affiliation_strings":["Department of Chemistry, University of Pennsylvania, 231 South 34 Street, Philadelphia, PA, 19104-6323, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Pennsylvania, 231 South 34 Street, Philadelphia, PA, 19104-6323, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036927250","display_name":"Motohisa Oobatake","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I96636082","display_name":"Meijo University","ror":"https://ror.org/04h42fc75","country_code":"JP","type":"education","lineage":["https://openalex.org/I96636082"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Motohisa Oobatake","raw_affiliation_strings":["Faculty of Science and Technology, Meijo University, 1-501, Shiogamaguchi, Tenpaku-ku, Nagoya 468-8502, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Science and Technology, Meijo University, 1-501, Shiogamaguchi, Tenpaku-ku, Nagoya 468-8502, Japan","institution_ids":["https://openalex.org/I96636082"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003742638","display_name":"Hatsuho Uedaira","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hatsuho Uedaira","raw_affiliation_strings":["RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan","institution_ids":["https://openalex.org/I4210110652"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5033360131"],"corresponding_institution_ids":["https://openalex.org/I4210110652"],"apc_list":{"value":4150,"currency":"USD","value_usd":4150},"apc_paid":null,"fwci":1.5061,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.78145321,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"61","issue":"2","first_page":"121","last_page":"126"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.8817999958992004,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.8817999958992004,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.1062999963760376,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.0035000001080334187,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/thermodynamic-database","display_name":"thermodynamic database","score":0.9520000219345093},{"id":"https://openalex.org/keywords/protein-stability","display_name":"protein stability","score":0.9419999718666077},{"id":"https://openalex.org/keywords/protein-nucleic-acid-interactions","display_name":"protein-nucleic acid interactions","score":0.8980000019073486},{"id":"https://openalex.org/keywords/protein-nucleic-acid-binding","display_name":"protein-nucleic acid binding","score":0.9190000295639038},{"id":"https://openalex.org/keywords/protein-mutants","display_name":"protein mutants","score":0.7580000162124634},{"id":"https://openalex.org/keywords/protein-folding","display_name":"protein folding","score":0.7850000262260437},{"id":"https://openalex.org/keywords/molecular-recognition","display_name":"molecular recognition","score":0.8299999833106995},{"id":"https://openalex.org/keywords/web-based-database-interface","display_name":"web-based database interface","score":0.4659999907016754}],"concepts":[{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.6727885007858276},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.6139858365058899},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5878691673278809},{"id":"https://openalex.org/C186399102","wikidata":"https://www.wikidata.org/wiki/Q903517","display_name":"Chemical stability","level":2,"score":0.5255823731422424},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5120192170143127},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.46522045135498047},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.4578200578689575},{"id":"https://openalex.org/C49853544","wikidata":"https://www.wikidata.org/wiki/Q206229","display_name":"Biomolecule","level":2,"score":0.42480459809303284},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3286786377429962},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.21483519673347473},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.14881360530853271},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08697488903999329},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1002/1097-0282(2002)61:2<121::aid-bip10077>3.0.co;2-1","doi":"https://doi.org/10.1002/1097-0282(2002)61:2<121::aid-bip10077>3.0.co;2-1","is_oa":false,"landing_page_url":"https://doi.org/10.1002/1097-0282(2002)61:2<121::aid-bip10077>3.0.co;2-1","pdf_url":null,"source":{"id":"https://openalex.org/S56808608","display_name":"Biopolymers","issn_l":"0006-3525","issn":["0006-3525","1097-0282"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biopolymers","raw_type":"journal-article"},{"id":"pmid:11987161","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11987161","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biopolymers","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1506501558","https://openalex.org/W2026258231","https://openalex.org/W2057029228","https://openalex.org/W2057598796","https://openalex.org/W2071892366","https://openalex.org/W2111973517","https://openalex.org/W2116755746","https://openalex.org/W2122410355","https://openalex.org/W2130479394","https://openalex.org/W2139517791","https://openalex.org/W2140115103","https://openalex.org/W2159482845","https://openalex.org/W2164656441","https://openalex.org/W2490542953","https://openalex.org/W4213149192","https://openalex.org/W4239620712","https://openalex.org/W4248441758","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2099672241","https://openalex.org/W2129340336","https://openalex.org/W1186271471","https://openalex.org/W2164656441","https://openalex.org/W952639583","https://openalex.org/W1939933330","https://openalex.org/W7096844229","https://openalex.org/W2151373045","https://openalex.org/W4363676224","https://openalex.org/W3105751341"],"abstract_inverted_index":{"Thermodynamic":[0,59,87],"data":[1,40,67,95,115,139],"regarding":[2],"proteins":[3,29,178,189],"and":[4,18,30,44,63,77,83,108,111,127,147,150,155,175,179,182],"their":[5,31,156,180],"interactions":[6,45],"are":[7,23,46],"important":[8],"for":[9,28,37,61,89,96,124,138,187],"understanding":[10],"the":[11,109,170,191],"mechanisms":[12],"of":[13,68,72,104,129,177],"protein":[14,16,42,73],"folding,":[15],"stability,":[17,74],"molecular":[19,153],"recognition.":[20],"Although":[21],"there":[22],"several":[24,69],"structural":[25,102,163],"databases":[26,36],"available":[27],"complexes":[32],"with":[33,80,144,162],"other":[34],"molecules,":[35],"experimental":[38,75,100],"thermodynamic":[39,56,70,94,159],"on":[41,141],"stability":[43],"rather":[47],"scarce.":[48],"Thus,":[49],"we":[50],"have":[51,116],"developed":[52],"two":[53],"electronically":[54],"accessible":[55],"databases.":[57],"ProTherm,":[58],"Database":[60,88],"Proteins":[62],"Mutants,":[64],"contains":[65,93],"numerical":[66],"parameters":[71],"methods":[76],"conditions,":[78,101,143],"along":[79],"structural,":[81],"functional,":[82],"literature":[84,112],"information.":[85,113],"ProNIT,":[86],"Protein-Nucleic":[90],"Acid":[91],"Interactions,":[92],"protein-nucleic":[97],"acid":[98],"binding,":[99],"information":[103],"proteins,":[105],"nucleic":[106],"acids":[107],"complex,":[110],"These":[114,158],"been":[117],"incorporated":[118],"into":[119,169],"3DinSight,":[120],"an":[121],"integrated":[122],"database":[123],"structure,":[125,173],"function,":[126,174],"properties":[128],"biomolecules.":[130],"A":[131],"WWW":[132],"interface":[133],"allows":[134],"users":[135],"to":[136,151],"search":[137],"based":[140],"various":[142],"different":[145],"display":[146],"sorting":[148],"options,":[149],"visualize":[152],"structures":[154],"interactions.":[157],"databases,":[160,164],"together":[161],"help":[165],"researchers":[166],"gain":[167],"insight":[168],"relationship":[171],"among":[172],"thermodynamics":[176],"interactions,":[181],"will":[183],"become":[184],"useful":[185],"resources":[186],"studying":[188],"in":[190],"postgenomic":[192],"era.":[193]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2016-06-24T00:00:00"}
