{"id":"https://openalex.org/W1993383916","doi":"https://doi.org/10.1145/1557019.1557031","title":"Structured correspondence topic models for mining captioned figures in biological literature","display_name":"Structured correspondence topic models for mining captioned figures in biological literature","publication_year":2009,"publication_date":"2009-06-28","ids":{"openalex":"https://openalex.org/W1993383916","doi":"https://doi.org/10.1145/1557019.1557031","mag":"1993383916","pmid":"https://pubmed.ncbi.nlm.nih.gov/25485170","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4256960"},"language":"en","primary_location":{"id":"doi:10.1145/1557019.1557031","doi":"https://doi.org/10.1145/1557019.1557031","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1557019.1557031","pdf_url":null,"source":{"id":"https://openalex.org/S4363608767","display_name":"ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4256960","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009154893","display_name":"Amr AbdelFatah Ahmed","orcid":"https://orcid.org/0000-0002-7749-7911","observed_orcids":["https://orcid.org/0000-0002-7749-7911","https://orcid.org/0000-0003-3477-236X","https://orcid.org/0000-0002-8742-4396"]},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amr Ahmed","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA, USA","Carnegie-Mellon University, Pittsburgh, Pa., USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Carnegie-Mellon University, Pittsburgh, Pa., USA#TAB#","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009547049","display_name":"Eric P. Xing","orcid":"https://orcid.org/0009-0005-9158-4201","observed_orcids":["https://orcid.org/0009-0005-9158-4201","https://orcid.org/0000-0002-3683-4280"]},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric P. Xing","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA, USA","Carnegie-Mellon University, Pittsburgh, Pa., USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Carnegie-Mellon University, Pittsburgh, Pa., USA#TAB#","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051617344","display_name":"William W. Cohen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William W. Cohen","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA, USA","Carnegie-Mellon University, Pittsburgh, Pa., USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Carnegie-Mellon University, Pittsburgh, Pa., USA#TAB#","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061773929","display_name":"Robert F. Murphy","orcid":"https://orcid.org/0000-0003-0358-901X","observed_orcids":["https://orcid.org/0000-0003-0358-901X"]},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert F. Murphy","raw_affiliation_strings":["Carnegie Mellon University, Pittsburgh, PA, USA","Carnegie-Mellon University, Pittsburgh, Pa., USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Carnegie-Mellon University, Pittsburgh, Pa., USA#TAB#","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I74973139"],"apc_list":null,"apc_paid":null,"fwci":15.4032,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.99194423,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"2009","issue":null,"first_page":"39","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.73580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.73580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.03269999846816063,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.02710000053048134,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-topic-models","display_name":"probabilistic topic models","score":0.6850000023841858},{"id":"https://openalex.org/keywords/collapsed-gibbs-sampling","display_name":"collapsed Gibbs sampling","score":0.9350000023841858},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"information retrieval","score":0.4699999988079071},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"knowledge extraction","score":0.593999981880188}],"concepts":[{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.8887263536453247},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8070683479309082},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6624979972839355},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5594555139541626},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5582131743431091},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5406221151351929},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5341277122497559},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.4683990180492401},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.44540420174598694},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4398314654827118},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4281136393547058},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4178849756717682},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30701908469200134},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1145/1557019.1557031","doi":"https://doi.org/10.1145/1557019.1557031","is_oa":false,"landing_page_url":"https://doi.org/10.1145/1557019.1557031","pdf_url":null,"source":{"id":"https://openalex.org/S4363608767","display_name":"ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining","raw_type":"proceedings-article"},{"id":"pmid:25485170","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25485170","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"KDD : proceedings. International Conference on Knowledge Discovery & Data Mining","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4256960","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4256960","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"KDD","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.149.8876","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.149.8876","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.cmu.edu/~epxing/papers/2009/ahmed_xing_cohen_murphy_kdd09.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.150.1686","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.150.1686","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.cmu.edu/~amahmed/papers/ahmed_xing_cohen_murphy_kdd09.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.186.6737","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.186.6737","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://murphylab.web.cmu.edu/publications/160-ahmed2009.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.403.6532","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.403.6532","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ml.cmu.edu/research/dap-papers/cmu-ml-09-105-ahmed.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4256960","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4256960","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"KDD","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G5481208482","display_name":"Probabilistic Modeling of Information from Images and Text in Online Journals","funder_award_id":"R01GM078622","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1507854426","https://openalex.org/W2001082470","https://openalex.org/W2020842694","https://openalex.org/W2045656233","https://openalex.org/W2071475771","https://openalex.org/W2093390569","https://openalex.org/W2094414211","https://openalex.org/W2098401485","https://openalex.org/W2113846729","https://openalex.org/W2137268161","https://openalex.org/W2137918516","https://openalex.org/W2147152072","https://openalex.org/W2150722176","https://openalex.org/W2163615352","https://openalex.org/W2168598710","https://openalex.org/W2169591950","https://openalex.org/W2170512680","https://openalex.org/W2914367856","https://openalex.org/W4206765718","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W7097961584","https://openalex.org/W2115014674","https://openalex.org/W7096869353","https://openalex.org/W2948269756","https://openalex.org/W2040398687","https://openalex.org/W2269664426","https://openalex.org/W7100156487","https://openalex.org/W4250985670","https://openalex.org/W2287771898","https://openalex.org/W2140291633"],"abstract_inverted_index":{"A":[0],"major":[1,115],"source":[2],"of":[3,32,88,97,105,172,193,213],"information":[4,107,163],"(often":[5],"the":[6,22,59,62,79,82,86,125,145,173,185,194,202],"most":[7],"crucial":[8],"and":[9,19,28,36,94,103,122,150,165],"informative":[10],"part)":[11],"in":[12,61,81,91,118,124,177,201],"scholarly":[13],"articles":[14],"from":[15,108],"scientific":[16,38],"journals,":[17],"proceedings":[18],"books":[20],"are":[21],"figures":[23,110],"that":[24,181],"directly":[25],"provide":[26],"images":[27,80],"other":[29,37],"graphical":[30],"illustrations":[31],"key":[33,174],"experimental":[34],"results":[35],"contents.":[39],"In":[40],"biological":[41,89,106,148],"articles,":[42],"a":[43,114,130,138,211],"typical":[44],"figure":[45,140],"often":[46],"comprises":[47],"multiple":[48],"panels,":[49],"accompanied":[50],"by":[51],"either":[52],"scoped":[53],"or":[54],"global":[55],"captioned":[56],"text.":[57],"Moreover,":[58],"text":[60],"caption":[63],"contains":[64],"important":[65],"semantic":[66],"entities":[67],"such":[68],"as":[69,113],"protein":[70],"names,":[71],"gene":[72],"ontology,":[73],"tissues":[74],"labels,":[75],"etc.,":[76],"relevant":[77],"to":[78,85,143,217],"figure.":[83],"Due":[84],"avalanche":[87],"literature":[90,109],"recent":[92],"years,":[93],"increasing":[95],"popularity":[96],"various":[98,208],"bio-imaging":[99],"techniques,":[100],"automatic":[101],"retrieval":[102,164],"summarization":[104],"has":[111,182],"emerged":[112],"unsolved":[116],"challenge":[117],"computational":[119],"knowledge":[120],"extraction":[121],"management":[123],"life":[126],"science.":[127],"We":[128],"present":[129,207],"new":[131],"structured":[132],"probabilistic":[133],"topic":[134],"model":[135,144],"built":[136],"on":[137,158,198,210],"realistic":[139],"generation":[141],"scheme":[142],"structurally":[146],"annotated":[147],"figures,":[149],"we":[151,206],"derive":[152],"an":[153],"efficient":[154],"inference":[155],"algorithm":[156],"based":[157],"collapsed":[159],"Gibbs":[160],"sampling":[161],"for":[162],"visualization.":[166],"The":[167],"resulting":[168],"program":[169],"constitutes":[170],"one":[171],"IR":[175],"engines":[176],"our":[178,219],"SLIF":[179],"system":[180],"recently":[183],"entered":[184],"final":[186],"round":[187],"(4":[188],"out":[189],"70":[190],"competing":[191],"systems)":[192],"Elsevier":[195],"Grand":[196],"Challenge":[197],"Knowledge":[199],"Enhancement":[200],"Life":[203],"Science.":[204],"Here":[205],"evaluations":[209],"number":[212],"data":[214],"mining":[215],"tasks":[216],"illustrate":[218],"method.":[220]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":6}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2016-06-24T00:00:00"}
