{"id":"https://openalex.org/W1991755232","doi":"https://doi.org/10.1094/mpmi-02-13-0035-r","title":"The Phytophthora sojae Avr1d Gene Encodes an RxLR-dEER Effector with Presence and Absence Polymorphisms Among Pathogen Strains","display_name":"The Phytophthora sojae Avr1d Gene Encodes an RxLR-dEER Effector with Presence and Absence Polymorphisms Among Pathogen Strains","publication_year":2013,"publication_date":"2013-04-17","ids":{"openalex":"https://openalex.org/W1991755232","doi":"https://doi.org/10.1094/mpmi-02-13-0035-r","mag":"1991755232","pmid":"https://pubmed.ncbi.nlm.nih.gov/23594349"},"language":"en","primary_location":{"id":"doi:10.1094/mpmi-02-13-0035-r","doi":"https://doi.org/10.1094/mpmi-02-13-0035-r","is_oa":false,"landing_page_url":"https://doi.org/10.1094/mpmi-02-13-0035-r","pdf_url":null,"source":{"id":"https://openalex.org/S88768767","display_name":"Molecular Plant-Microbe Interactions","issn_l":"0894-0282","issn":["0894-0282","1943-7706"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320276","host_organization_name":"American Phytopathological Society","host_organization_lineage":["https://openalex.org/P4310320276"],"host_organization_lineage_names":["American Phytopathological Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Plant-Microbe Interactions\u00ae","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005718861","display_name":"Weixiao Yin","orcid":"https://orcid.org/0000-0002-5231-3979","observed_orcids":["https://orcid.org/0000-0002-5231-3979"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weixiao Yin","raw_affiliation_strings":["Nanjing Agricultural University, Nanjing, China","Nanjing Agricultural Univ., Nanjing (China)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Agricultural University, Nanjing, China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Nanjing Agricultural Univ., Nanjing (China)","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086260673","display_name":"Suomeng Dong","orcid":"https://orcid.org/0000-0002-9623-6776","observed_orcids":["https://orcid.org/0000-0002-9623-6776"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Suomeng Dong","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017142668","display_name":"Luchong Zhai","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Luchong Zhai","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030786110","display_name":"Yachun Lin","orcid":"https://orcid.org/0000-0001-7353-8918","observed_orcids":["https://orcid.org/0000-0001-7353-8918"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yachun Lin","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107858680","display_name":"Xiaobo Zheng","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaobo Zheng","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028607835","display_name":"Yuanchao Wang","orcid":"https://orcid.org/0000-0001-5803-5343","observed_orcids":["https://orcid.org/0000-0001-5803-5343","https://orcid.org/0009-0004-0361-5657","https://orcid.org/0009-0000-1624-7567"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuanchao Wang","raw_affiliation_strings":["Corresponding author: Y. Wang; Telephone: +86 25 84399071; E-mail: \r\n                    E-mail Address:\r\n                    [email\u00a0protected]","E-mail: \n                    E-mail Address:\n                    [email\u00a0protected]","Telephone: +86 25 84399071"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Corresponding author: Y. Wang; Telephone: +86 25 84399071; E-mail: \r\n                    E-mail Address:\r\n                    [email\u00a0protected]","institution_ids":[]},{"raw_affiliation_string":"E-mail: \n                    E-mail Address:\n                    [email\u00a0protected]","institution_ids":[]},{"raw_affiliation_string":"Telephone: +86 25 84399071","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3000,"currency":"USD","value_usd":3000},"apc_paid":null,"fwci":7.1191,"has_fulltext":false,"cited_by_count":48,"citation_normalized_percentile":{"value":0.96763061,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"8","first_page":"958","last_page":"968"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11771","display_name":"Plant Pathogens and Resistance","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11771","display_name":"Plant Pathogens and Resistance","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phytophthora-sojae","display_name":"Phytophthora sojae","score":1.0},{"id":"https://openalex.org/keywords/rxlr-effectors","display_name":"RXLR effectors","score":0.8849999904632568},{"id":"https://openalex.org/keywords/gene-for-gene-hypothesis","display_name":"gene-for-gene hypothesis","score":0.7670000195503235},{"id":"https://openalex.org/keywords/avirulence","display_name":"avirulence","score":0.6380000114440918},{"id":"https://openalex.org/keywords/hypersensitive-response","display_name":"hypersensitive response","score":0.9729999899864197},{"id":"https://openalex.org/keywords/plant-immunity-suppression","display_name":"plant immunity suppression","score":0.6290000081062317},{"id":"https://openalex.org/keywords/soybean","display_name":"soybean","score":0.5220000147819519},{"id":"https://openalex.org/keywords/oomycete-pathogen","display_name":"oomycete pathogen","score":0.7609999775886536},{"id":"https://openalex.org/keywords/cyst-germination","display_name":"cyst germination","score":0.6069999933242798}],"concepts":[{"id":"https://openalex.org/C2779872957","wikidata":"https://www.wikidata.org/wiki/Q7189828","display_name":"Phytophthora sojae","level":3,"score":0.9857273101806641},{"id":"https://openalex.org/C2777537739","wikidata":"https://www.wikidata.org/wiki/Q223597","display_name":"Oomycete","level":3,"score":0.9058783054351807},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.877808690071106},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.836533784866333},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6890466213226318},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6108205318450928},{"id":"https://openalex.org/C2780562374","wikidata":"https://www.wikidata.org/wiki/Q3024956","display_name":"Nicotiana benthamiana","level":3,"score":0.5681430101394653},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.5657479166984558},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.4409518539905548},{"id":"https://openalex.org/C2776620211","wikidata":"https://www.wikidata.org/wiki/Q3761178","display_name":"Phytophthora capsici","level":3,"score":0.4222768545150757},{"id":"https://openalex.org/C2780100698","wikidata":"https://www.wikidata.org/wiki/Q311294","display_name":"Phytophthora","level":2,"score":0.3772861361503601},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.15077155828475952},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.14599040150642395}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010838","descriptor_name":"Phytophthora","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010838","descriptor_name":"Phytophthora","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000469","qualifier_name":"parasitology","is_major_topic":true},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D016960","descriptor_name":"Agrobacterium tumefaciens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018515","descriptor_name":"Plant Leaves","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1094/mpmi-02-13-0035-r","doi":"https://doi.org/10.1094/mpmi-02-13-0035-r","is_oa":false,"landing_page_url":"https://doi.org/10.1094/mpmi-02-13-0035-r","pdf_url":null,"source":{"id":"https://openalex.org/S88768767","display_name":"Molecular Plant-Microbe Interactions","issn_l":"0894-0282","issn":["0894-0282","1943-7706"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320276","host_organization_name":"American Phytopathological Society","host_organization_lineage":["https://openalex.org/P4310320276"],"host_organization_lineage_names":["American Phytopathological Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Plant-Microbe Interactions\u00ae","raw_type":"journal-article"},{"id":"pmid:23594349","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23594349","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular plant-microbe interactions : MPMI","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:acf9e33d615a4bde99c5af73d6c9099d","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/acf9e33d615a4bde99c5af73d6c9099d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Molecular Plant-Microbe Interactions, Vol 26, Iss 8, Pp 958-968 (2013)","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.9208999872207642,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":67,"referenced_works":["https://openalex.org/W1529495410","https://openalex.org/W1571269646","https://openalex.org/W1798824720","https://openalex.org/W1965320478","https://openalex.org/W1967696990","https://openalex.org/W1971124177","https://openalex.org/W1976881128","https://openalex.org/W1978728468","https://openalex.org/W1987487268","https://openalex.org/W1991993713","https://openalex.org/W1996005798","https://openalex.org/W2010854320","https://openalex.org/W2012986985","https://openalex.org/W2024905753","https://openalex.org/W2026936889","https://openalex.org/W2030350258","https://openalex.org/W2030962800","https://openalex.org/W2033452345","https://openalex.org/W2034374114","https://openalex.org/W2034963583","https://openalex.org/W2035129085","https://openalex.org/W2041136465","https://openalex.org/W2044465599","https://openalex.org/W2047585633","https://openalex.org/W2047608141","https://openalex.org/W2050280736","https://openalex.org/W2063819416","https://openalex.org/W2065654765","https://openalex.org/W2067327084","https://openalex.org/W2067442982","https://openalex.org/W2068746016","https://openalex.org/W2072571824","https://openalex.org/W2085354280","https://openalex.org/W2088064033","https://openalex.org/W2090286421","https://openalex.org/W2090595780","https://openalex.org/W2096242878","https://openalex.org/W2097476042","https://openalex.org/W2098580863","https://openalex.org/W2100361336","https://openalex.org/W2102370923","https://openalex.org/W2102985329","https://openalex.org/W2110785772","https://openalex.org/W2112731187","https://openalex.org/W2120867442","https://openalex.org/W2123480403","https://openalex.org/W2123606651","https://openalex.org/W2123640245","https://openalex.org/W2127379294","https://openalex.org/W2131869897","https://openalex.org/W2132671821","https://openalex.org/W2133831062","https://openalex.org/W2136728261","https://openalex.org/W2138472234","https://openalex.org/W2139155185","https://openalex.org/W2145258372","https://openalex.org/W2154411205","https://openalex.org/W2156117594","https://openalex.org/W2156558334","https://openalex.org/W2157502333","https://openalex.org/W2158835221","https://openalex.org/W2160506991","https://openalex.org/W2160619010","https://openalex.org/W2160724408","https://openalex.org/W2162024355","https://openalex.org/W2162515800","https://openalex.org/W2165946989"],"related_works":["https://openalex.org/W2160724408","https://openalex.org/W2090286421","https://openalex.org/W2030146975","https://openalex.org/W2068746016","https://openalex.org/W2041136465","https://openalex.org/W2034374114","https://openalex.org/W4211220379","https://openalex.org/W4313829101","https://openalex.org/W2145969401","https://openalex.org/W2110785772"],"abstract_inverted_index":{"Soybean":[0],"root":[1],"and":[2,18,51,161,177,192],"stem":[3],"rot":[4],"is":[5],"caused":[6],"by":[7,188],"the":[8,21,79,84,94,113,132,146,158],"oomycete":[9],"pathogen":[10],"Phytophthora":[11],"sojae.":[12],"The":[13],"interaction":[14],"between":[15],"P.":[16,28,58,123,140,179],"sojae":[17,29,59,124,141],"soybean":[19,100,152],"fits":[20],"\"gene-for-gene\"":[22],"hypothesis.":[23],"Although":[24,130],"more":[25],"than":[26],"10":[27],"avirulence":[30,86],"(Avr)":[31],"effectors":[32],"have":[33,44],"been":[34,45],"genetically":[35,40],"identified,":[36],"nearly":[37],"half":[38],"of":[39,93,115,118,145,168,195],"defined":[41],"avr":[42],"genes":[43,120],"cloned.":[46],"In":[47],"a":[48,57,108,196],"previous":[49],"bioinformatic":[50],"global":[52],"transcriptional":[53],"analysis,":[54],"we":[55],"identified":[56],"RxLR":[60],"effector,":[61],"Avr1d,":[62],"which":[63],"was":[64,81,155],"125":[65],"amino":[66],"acids":[67],"in":[68,78,88,99,112,121,170,198],"length.":[69],"Mapping":[70],"data":[71],"demonstrated":[72],"that":[73,104],"Avr1d":[74,85,95,119,128,134,154,169,182],"presence":[75,114],"or":[76],"absence":[77],"genome":[80],"co-segregated":[82],"with":[83,190],"phenotype":[87],"F2":[89],"populations.":[90],"Transient":[91],"expression":[92,167],"gene":[96,106],"using":[97],"co-bombardment":[98],"isogenic":[101],"lines":[102],"revealed":[103,126],"this":[105],"triggered":[107],"hypersensitive":[109],"response":[110],"(HR)":[111],"Rps1d.":[116],"Sequencing":[117],"different":[122],"strains":[125,142],"two":[127,133],"alleles.":[129],"polymorphic,":[131],"alleles":[135,147],"could":[136],"trigger":[137],"Rps1d-mediated":[138],"HR.":[139],"carrying":[143],"either":[144],"were":[148],"avirulent":[149],"on":[150],"Rps1d":[151],"lines.":[153],"upregulated":[156],"during":[157],"germinating":[159],"cyst":[160],"early":[162],"infection":[163],"stages.":[164],"Furthermore,":[165],"transient":[166],"Nicotiana":[171],"benthamiana":[172],"suppressed":[173,184],"BAX-induced":[174],"cell":[175],"death":[176],"enhanced":[178],"capsici":[180],"infection.":[181],"also":[183],"effector-triggered":[185],"immunity":[186],"induction":[187],"associating":[189],"Avr1b":[191],"Rps1b,":[193],"suggestive":[194],"role":[197],"suppressing":[199],"plant":[200],"immunity.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
