{"id":"https://openalex.org/W1990452068","doi":"https://doi.org/10.4161/viru.25730","title":"Common and pathogen-specific virulence factors are different in function and structure","display_name":"Common and pathogen-specific virulence factors are different in function and structure","publication_year":2013,"publication_date":"2013-08-06","ids":{"openalex":"https://openalex.org/W1990452068","doi":"https://doi.org/10.4161/viru.25730","mag":"1990452068","pmid":"https://pubmed.ncbi.nlm.nih.gov/23863604","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/5359729"},"language":"en","primary_location":{"id":"doi:10.4161/viru.25730","doi":"https://doi.org/10.4161/viru.25730","is_oa":true,"landing_page_url":"https://doi.org/10.4161/viru.25730","pdf_url":null,"source":{"id":"https://openalex.org/S2484688887","display_name":"Virulence","issn_l":"2150-5594","issn":["2150-5594","2150-5608"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Virulence","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.4161/viru.25730","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Chao Niu","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chao Niu","raw_affiliation_strings":["Tianjin Institute of Health & Environmental Medicine, Tianjin, People's Republic of China","Beijing Institute of Biotechnology","Beijing, P.R. China","Tianjin Institute of Health & Environmental Medicine","Tianjin, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Health & Environmental Medicine, Tianjin, People's Republic of China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Tianjin Institute of Health & Environmental Medicine","institution_ids":[]},{"raw_affiliation_string":"Tianjin, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101416140","display_name":"Dong Su Yu","orcid":"https://orcid.org/0000-0001-6089-4905","observed_orcids":["https://orcid.org/0000-0001-6089-4905"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dong Yu","raw_affiliation_strings":["Beijing Institute of Biotechnology; Beijing, P.R. China","Beijing Institute of Biotechnology","Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Biotechnology; Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694837","display_name":"Yuelan Wang","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuelan Wang","raw_affiliation_strings":["Beijing Institute of Biotechnology; Beijing, P.R. China","Beijing Institute of Biotechnology","Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Biotechnology; Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074555375","display_name":"Hongguang Ren","orcid":"https://orcid.org/0000-0002-9151-6090","observed_orcids":["https://orcid.org/0000-0002-9151-6090"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hongguang Ren","raw_affiliation_strings":["Beijing Institute of Biotechnology; Beijing, P.R. China","Beijing Institute of Biotechnology","Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Biotechnology; Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100603552","display_name":"Yuan Jin","orcid":"https://orcid.org/0000-0001-8695-1525","observed_orcids":["https://orcid.org/0000-0001-8695-1525"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuan Jin","raw_affiliation_strings":["Beijing Institute of Biotechnology; Beijing, P.R. China","Beijing Institute of Biotechnology","Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Biotechnology; Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wei Zhou","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wei Zhou","raw_affiliation_strings":["Beijing Institute of Biotechnology; Beijing, P.R. China","Beijing Institute of Biotechnology","Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Biotechnology; Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003580236","display_name":"Beiping Li","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Beiping Li","raw_affiliation_strings":["Beijing Institute of Biotechnology; Beijing, P.R. China","Beijing Institute of Biotechnology","Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Biotechnology; Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112128275","display_name":"Yi-Yong Cheng","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yiyong Cheng","raw_affiliation_strings":["Tianjin Institute of Health & Environmental Medicine; Tianjin, P.R. China","Tianjin Institute of Health & Environmental Medicine","Tianjin, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Health & Environmental Medicine; Tianjin, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Tianjin Institute of Health & Environmental Medicine","institution_ids":[]},{"raw_affiliation_string":"Tianjin, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063923464","display_name":"Junjie Yue","orcid":"https://orcid.org/0000-0002-2549-9261","observed_orcids":["https://orcid.org/0000-0002-2549-9261"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Junjie Yue","raw_affiliation_strings":["Beijing Institute of Biotechnology; Beijing, P.R. China","Beijing Institute of Biotechnology","Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Biotechnology; Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012611475","display_name":"Zhixian Gao","orcid":"https://orcid.org/0000-0003-2818-6671","observed_orcids":["https://orcid.org/0000-0003-2818-6671"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Zhixian Gao","raw_affiliation_strings":["Tianjin Institute of Health & Environmental Medicine; Tianjin, P.R. China","Tianjin Institute of Health & Environmental Medicine","Tianjin, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Institute of Health & Environmental Medicine; Tianjin, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Tianjin Institute of Health & Environmental Medicine","institution_ids":[]},{"raw_affiliation_string":"Tianjin, P.R. China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077845197","display_name":"Long Liang","orcid":"https://orcid.org/0000-0002-0290-261X","observed_orcids":["https://orcid.org/0000-0002-0290-261X"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Long Liang","raw_affiliation_strings":["Beijing Institute of Biotechnology; Beijing, P.R. China","Beijing Institute of Biotechnology","Beijing, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Biotechnology; Beijing, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Beijing Institute of Biotechnology","institution_ids":[]},{"raw_affiliation_string":"Beijing, P.R. China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5012611475","https://openalex.org/A5063923464","https://openalex.org/A5077845197"],"corresponding_institution_ids":[],"apc_list":{"value":2085,"currency":"GBP","value_usd":2557},"apc_paid":{"value":2085,"currency":"GBP","value_usd":2557},"fwci":1.4107,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.7639704,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"4","issue":"6","first_page":"473","last_page":"482"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.7465999722480774,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.7465999722480774,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.06769999861717224,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.05530000105500221,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virulence-factors","display_name":"virulence factors","score":0.9580000042915344},{"id":"https://openalex.org/keywords/pathogenicity-islands","display_name":"pathogenicity islands","score":0.8330000042915344},{"id":"https://openalex.org/keywords/type-iii-secretion-system","display_name":"type III secretion system","score":0.8629999756813049},{"id":"https://openalex.org/keywords/exotoxins","display_name":"exotoxins","score":0.9150000214576721},{"id":"https://openalex.org/keywords/protein-domain-architecture","display_name":"protein domain architecture","score":0.753000020980835},{"id":"https://openalex.org/keywords/host-pathogen-interaction","display_name":"host-pathogen interaction","score":0.8690000176429749},{"id":"https://openalex.org/keywords/bacterial-virulence","display_name":"bacterial virulence","score":0.460999995470047},{"id":"https://openalex.org/keywords/nonpathogenic-bacteria","display_name":"non-pathogenic bacteria","score":0.7110000252723694}],"concepts":[{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.934195876121521},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8757311701774597},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.8623991012573242},{"id":"https://openalex.org/C2781090273","wikidata":"https://www.wikidata.org/wiki/Q1623405","display_name":"Virulence factor","level":4,"score":0.6615456342697144},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.614501953125},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.6092985272407532},{"id":"https://openalex.org/C24527192","wikidata":"https://www.wikidata.org/wiki/Q17149729","display_name":"Human pathogen","level":3,"score":0.5578733086585999},{"id":"https://openalex.org/C62130838","wikidata":"https://www.wikidata.org/wiki/Q5196163","display_name":"Pathogenicity island","level":4,"score":0.484570175409317},{"id":"https://openalex.org/C2778883795","wikidata":"https://www.wikidata.org/wiki/Q804517","display_name":"Pathogenic bacteria","level":3,"score":0.45731326937675476},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4268777370452881},{"id":"https://openalex.org/C2778375072","wikidata":"https://www.wikidata.org/wiki/Q5909198","display_name":"Host\u2013pathogen interaction","level":4,"score":0.41152191162109375},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.411129355430603},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3755508065223694},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3513701856136322},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3008350729942322},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.0766524076461792}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D044404","descriptor_name":"Genomic Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.4161/viru.25730","doi":"https://doi.org/10.4161/viru.25730","is_oa":true,"landing_page_url":"https://doi.org/10.4161/viru.25730","pdf_url":null,"source":{"id":"https://openalex.org/S2484688887","display_name":"Virulence","issn_l":"2150-5594","issn":["2150-5594","2150-5608"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Virulence","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5359729","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5359729","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Virulence","raw_type":"Text"},{"id":"pmid:23863604","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23863604","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Virulence","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.4161/viru.25730","doi":"https://doi.org/10.4161/viru.25730","is_oa":true,"landing_page_url":"https://doi.org/10.4161/viru.25730","pdf_url":null,"source":{"id":"https://openalex.org/S2484688887","display_name":"Virulence","issn_l":"2150-5594","issn":["2150-5594","2150-5608"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Virulence","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.4043000042438507}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320336756","display_name":"Tianjin Science and Technology Program","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W1493243104","https://openalex.org/W1525521077","https://openalex.org/W1532987327","https://openalex.org/W1568912715","https://openalex.org/W1968077150","https://openalex.org/W1975589139","https://openalex.org/W1988700176","https://openalex.org/W1991056282","https://openalex.org/W1995167035","https://openalex.org/W1998312671","https://openalex.org/W2002981040","https://openalex.org/W2007745123","https://openalex.org/W2009234149","https://openalex.org/W2009457103","https://openalex.org/W2013791086","https://openalex.org/W2018271515","https://openalex.org/W2024746774","https://openalex.org/W2026096712","https://openalex.org/W2032773353","https://openalex.org/W2040853949","https://openalex.org/W2045789066","https://openalex.org/W2052702057","https://openalex.org/W2054063230","https://openalex.org/W2062734626","https://openalex.org/W2063655745","https://openalex.org/W2065329772","https://openalex.org/W2085594219","https://openalex.org/W2088258525","https://openalex.org/W2089333639","https://openalex.org/W2089594628","https://openalex.org/W2097165693","https://openalex.org/W2098621809","https://openalex.org/W2101347991","https://openalex.org/W2102658904","https://openalex.org/W2102884567","https://openalex.org/W2106013076","https://openalex.org/W2107996797","https://openalex.org/W2116762249","https://openalex.org/W2119702209","https://openalex.org/W2121695290","https://openalex.org/W2121909044","https://openalex.org/W2124616371","https://openalex.org/W2126730752","https://openalex.org/W2129636433","https://openalex.org/W2130956021","https://openalex.org/W2133653874","https://openalex.org/W2134484762","https://openalex.org/W2135554057","https://openalex.org/W2137464714","https://openalex.org/W2137678717","https://openalex.org/W2141885858","https://openalex.org/W2142736798","https://openalex.org/W2144211111","https://openalex.org/W2145100181","https://openalex.org/W2147115561","https://openalex.org/W2150891147","https://openalex.org/W2158700061","https://openalex.org/W2162536033","https://openalex.org/W2163105490","https://openalex.org/W2167188257","https://openalex.org/W2167210281","https://openalex.org/W2167788433","https://openalex.org/W2169929748","https://openalex.org/W2915868289","https://openalex.org/W4210323379","https://openalex.org/W4211040199","https://openalex.org/W4234317413","https://openalex.org/W7095728653"],"related_works":["https://openalex.org/W84536821","https://openalex.org/W3021958162","https://openalex.org/W2900102202","https://openalex.org/W2072967720","https://openalex.org/W2898120697","https://openalex.org/W3038025306","https://openalex.org/W4414137815","https://openalex.org/W3001443147","https://openalex.org/W7095653058","https://openalex.org/W7098974675"],"abstract_inverted_index":{"In":[0,245],"the":[1,43,61,68,82,98,118,146,182,247,250,258],"process":[2],"of":[3,30,49,60,70,84,91,145,152,181,185,249,253],"host-pathogen":[4],"interactions,":[5],"bacterial":[6,36,41,95],"pathogens":[7,37,42,134],"always":[8],"employ":[9],"some":[10,59],"special":[11],"genes,":[12],"e.g.,":[13],"virulence":[14,85,89,99],"factors":[15,90],"(VFs)":[16],"to":[17,26,45,78,109,171,210,226,279],"interact":[18],"with":[19],"host":[20],"and":[21,73,105,123,127,135,143,155,165,190,222,242,257,269,283],"cause":[22,46],"damage":[23,50],"or":[24,51],"diseases":[25],"host.":[27],"A":[28],"number":[29,268],"VFs":[31,63,126,130,154,157,167,186,254,263,277],"have":[32],"been":[33,56],"identified":[34,62],"in":[35,67,132,158,174,192,213,229,239],"that":[38,58,197,235,261,275],"confer":[39],"upon":[40],"ability":[44],"various":[47],"types":[48],"diseases.":[52],"However,":[53],"it":[54],"has":[55],"clarified":[57],"are":[64,204],"also":[65,188,233],"encoded":[66],"genomes":[69,96],"nonpathogenic":[71],"bacteria,":[72],"this":[74],"finding":[75],"gives":[76],"rise":[77],"considerable":[79],"controversy":[80],"about":[81],"definition":[83],"factor.":[86],"Here":[87],"1988":[88],"51":[92],"sequenced":[93],"pathogenic":[94],"from":[97],"factor":[100],"database":[101,114],"(VFDB)":[102],"were":[103,137,168,187,224,237],"collected,":[104],"an":[106],"orthologous":[107],"comparison":[108],"a":[110,265],"non-pathogenic":[111],"bacteria":[112],"protein":[113],"was":[115,162,255],"conducted":[116],"using":[117],"reciprocal-best-BLAST-hits":[119],"approach.":[120],"Six":[121],"hundred":[122],"twenty":[124],"pathogen-specific":[125,153,166,214,241],"1368":[128],"common":[129,156,177,230,243,262,276],"(present":[131],"both":[133,240],"nonpathogens)":[136],"identified,":[138],"which":[139],"account":[140],"for":[141],"31.19%":[142],"68.81%":[144],"total":[147],"VFs,":[148,215],"respectively.":[149],"The":[150,179],"distribution":[151],"pathogenicity":[159],"islands":[160],"(PAIs)":[161],"systematically":[163],"investigated,":[164],"more":[169,281],"likely":[170],"be":[172,211,227,280],"located":[173,238],"PAIs":[175],"than":[176],"VFs.":[178,231,244],"function":[180],"two":[183,251],"classes":[184,252],"analyzed":[189],"compared":[191],"depth.":[193],"Our":[194],"results":[195,259],"indicated":[196,260],"most":[198],"but":[199],"not":[200],"all":[201],"T3SS":[202,206,217],"proteins":[203,208],"pathogen-specific.":[205],"effector":[207],"tended":[209],"distributed":[212,228],"whereas":[216],"translocation":[218],"proteins,":[219,221],"apparatus":[220],"chaperones":[223],"inclined":[225],"We":[232],"observed":[234],"exotoxins":[236],"addition,":[246],"architecture":[248],"compared,":[256],"had":[264],"higher":[266],"domain":[267,271],"lower":[270],"coverage":[272],"value,":[273],"revealed":[274],"tend":[278],"complex":[282],"less":[284],"compact":[285],"proteins.":[286]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
