{"id":"https://openalex.org/W1989421019","doi":"https://doi.org/10.1128/aem.06214-11","title":"Enhanced Growth of Acidovorax sp. Strain 2AN during Nitrate-Dependent Fe(II) Oxidation in Batch and Continuous-Flow Systems","display_name":"Enhanced Growth of Acidovorax sp. Strain 2AN during Nitrate-Dependent Fe(II) Oxidation in Batch and Continuous-Flow Systems","publication_year":2011,"publication_date":"2011-10-15","ids":{"openalex":"https://openalex.org/W1989421019","doi":"https://doi.org/10.1128/aem.06214-11","mag":"1989421019","pmid":"https://pubmed.ncbi.nlm.nih.gov/22003007","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3233087"},"language":"en","primary_location":{"id":"doi:10.1128/aem.06214-11","doi":"https://doi.org/10.1128/aem.06214-11","is_oa":false,"landing_page_url":"https://doi.org/10.1128/aem.06214-11","pdf_url":null,"source":{"id":"https://openalex.org/S158228368","display_name":"Applied and Environmental Microbiology","issn_l":"0099-2240","issn":["0099-2240","1070-6291","1098-5336"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied and Environmental Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3233087/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072569074","display_name":"Anirban Chakraborty","orcid":"https://orcid.org/0000-0002-1109-3797","observed_orcids":["https://orcid.org/0000-0002-1109-3797","https://orcid.org/0009-0005-6268-8896"]},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anirban Chakraborty","raw_affiliation_strings":["School of Public and Environmental Affairs, Indiana University, Bloomington, Indiana 47405","School of Public and Environmental Affairs, Indiana University, Bloomington, Indiana 47405#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Public and Environmental Affairs, Indiana University, Bloomington, Indiana 47405","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"raw_affiliation_string":"School of Public and Environmental Affairs, Indiana University, Bloomington, Indiana 47405#TAB#","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061204636","display_name":"Eric Roden","orcid":"https://orcid.org/0000-0002-1555-4343","observed_orcids":["https://orcid.org/0000-0002-1555-4343"]},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric E. Roden","raw_affiliation_strings":["Department of Geology and Geophysics, University of Wisconsin\u2014Madison, Madison, Wisconsin 53706"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Geology and Geophysics, University of Wisconsin\u2014Madison, Madison, Wisconsin 53706","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029629297","display_name":"J\u00fcergen Schieber","orcid":"https://orcid.org/0000-0003-0689-0780","observed_orcids":["https://orcid.org/0000-0003-0689-0780"]},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J\u00fcrgen Schieber","raw_affiliation_strings":["Department of Geological Sciences, Indiana University, Bloomington, Indiana 47405"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Geological Sciences, Indiana University, Bloomington, Indiana 47405","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111384542","display_name":"Flynn W. Picardal","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Flynn Picardal","raw_affiliation_strings":["School of Public and Environmental Affairs, Indiana University, Bloomington, Indiana 47405","School of Public and Environmental Affairs, Indiana University, Bloomington, Indiana 47405#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Public and Environmental Affairs, Indiana University, Bloomington, Indiana 47405","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"raw_affiliation_string":"School of Public and Environmental Affairs, Indiana University, Bloomington, Indiana 47405#TAB#","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":7.8211,"has_fulltext":false,"cited_by_count":165,"citation_normalized_percentile":{"value":0.97261658,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"77","issue":"24","first_page":"8548","last_page":"8556"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.7148000001907349,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.7148000001907349,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11073","display_name":"Metal Extraction and Bioleaching","score":0.09610000252723694,"subfield":{"id":"https://openalex.org/subfields/2506","display_name":"Metals and Alloys"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.07150000333786011,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mixotrophic-growth","display_name":"mixotrophic growth","score":0.7850000262260437},{"id":"https://openalex.org/keywords/acetate","display_name":"acetate","score":0.4440000057220459},{"id":"https://openalex.org/keywords/continuous-flow-culture","display_name":"continuous flow culture","score":0.6690000295639038},{"id":"https://openalex.org/keywords/anoxic-sediments","display_name":"anoxic sediments","score":0.7990000247955322},{"id":"https://openalex.org/keywords/fe-ii-edta","display_name":"Fe(II)-EDTA","score":0.7829999923706055},{"id":"https://openalex.org/keywords/low-substrate-concentration","display_name":"low substrate concentration","score":0.4569999873638153},{"id":"https://openalex.org/keywords/fe-ii-oxidation","display_name":"Fe(II) oxidation","score":0.5809999704360962}],"concepts":[{"id":"https://openalex.org/C108970007","wikidata":"https://www.wikidata.org/wiki/Q568324","display_name":"Anoxic waters","level":2,"score":0.8558577299118042},{"id":"https://openalex.org/C2776384668","wikidata":"https://www.wikidata.org/wiki/Q182168","display_name":"Nitrate","level":2,"score":0.6240828037261963},{"id":"https://openalex.org/C2777289219","wikidata":"https://www.wikidata.org/wiki/Q7632154","display_name":"Substrate (aquarium)","level":2,"score":0.5891864895820618},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5670946836471558},{"id":"https://openalex.org/C55904794","wikidata":"https://www.wikidata.org/wiki/Q82682","display_name":"Redox","level":2,"score":0.4448970854282379},{"id":"https://openalex.org/C76479393","wikidata":"https://www.wikidata.org/wiki/Q585902","display_name":"Mixotroph","level":4,"score":0.419014036655426},{"id":"https://openalex.org/C13965031","wikidata":"https://www.wikidata.org/wiki/Q243545","display_name":"Nuclear chemistry","level":1,"score":0.4047365188598633},{"id":"https://openalex.org/C179104552","wikidata":"https://www.wikidata.org/wiki/Q11165","display_name":"Inorganic chemistry","level":1,"score":0.3205462396144867},{"id":"https://openalex.org/C107872376","wikidata":"https://www.wikidata.org/wiki/Q321355","display_name":"Environmental chemistry","level":1,"score":0.3108171820640564},{"id":"https://openalex.org/C35195898","wikidata":"https://www.wikidata.org/wiki/Q159344","display_name":"Heterotroph","level":3,"score":0.23111289739608765},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.22693568468093872},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.1698031723499298},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1653205156326294},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.11852380633354187},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005290","descriptor_name":"Ferric Compounds","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005296","descriptor_name":"Ferrous Compounds","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008124","descriptor_name":"Locomotion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009566","descriptor_name":"Nitrates","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019149","descriptor_name":"Bioreactors","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D042621","descriptor_name":"Comamonadaceae","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":true},{"descriptor_ui":"D042621","descriptor_name":"Comamonadaceae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D042621","descriptor_name":"Comamonadaceae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1128/aem.06214-11","doi":"https://doi.org/10.1128/aem.06214-11","is_oa":false,"landing_page_url":"https://doi.org/10.1128/aem.06214-11","pdf_url":null,"source":{"id":"https://openalex.org/S158228368","display_name":"Applied and Environmental Microbiology","issn_l":"0099-2240","issn":["0099-2240","1070-6291","1098-5336"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied and Environmental Microbiology","raw_type":"journal-article"},{"id":"pmid:22003007","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22003007","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied and environmental microbiology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3233087","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3233087/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Appl Environ Microbiol","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3233087","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3233087/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Appl Environ Microbiol","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W244186264","https://openalex.org/W643390608","https://openalex.org/W1176488195","https://openalex.org/W1488948166","https://openalex.org/W1498144289","https://openalex.org/W1519389355","https://openalex.org/W1524940283","https://openalex.org/W1555485750","https://openalex.org/W1594388293","https://openalex.org/W1676012238","https://openalex.org/W1712010388","https://openalex.org/W1790911505","https://openalex.org/W1837827509","https://openalex.org/W1856219842","https://openalex.org/W1881586736","https://openalex.org/W1964917293","https://openalex.org/W1975967547","https://openalex.org/W1979651681","https://openalex.org/W1981219076","https://openalex.org/W1985614254","https://openalex.org/W1997202712","https://openalex.org/W1997476054","https://openalex.org/W2012740414","https://openalex.org/W2026699540","https://openalex.org/W2028503028","https://openalex.org/W2031049841","https://openalex.org/W2046568229","https://openalex.org/W2050337243","https://openalex.org/W2062662157","https://openalex.org/W2075271243","https://openalex.org/W2077688484","https://openalex.org/W2079905572","https://openalex.org/W2083785794","https://openalex.org/W2086373249","https://openalex.org/W2091913250","https://openalex.org/W2094337473","https://openalex.org/W2097640027","https://openalex.org/W2098295017","https://openalex.org/W2099542505","https://openalex.org/W2130978061","https://openalex.org/W2131353163","https://openalex.org/W2132581380","https://openalex.org/W2153329023","https://openalex.org/W2157028772","https://openalex.org/W2157734476","https://openalex.org/W2157899451","https://openalex.org/W2164200068","https://openalex.org/W2167010717","https://openalex.org/W2169944895","https://openalex.org/W2171144657","https://openalex.org/W2502770052","https://openalex.org/W3173624724"],"related_works":["https://openalex.org/W2153329023","https://openalex.org/W2164029868","https://openalex.org/W2166354240","https://openalex.org/W2120370228","https://openalex.org/W2154150416","https://openalex.org/W2097967507","https://openalex.org/W2801832056","https://openalex.org/W7134966498","https://openalex.org/W2171144657","https://openalex.org/W2109676654"],"abstract_inverted_index":{"Microbial":[0],"nitrate-dependent,":[1],"Fe(II)":[2,19,31,113,148,218],"oxidation":[3],"(NDFO)":[4],"is":[5],"a":[6,64,91,178],"ubiquitous":[7],"biogeochemical":[8],"process":[9,41],"in":[10,46,67,86,90,214,220],"anoxic":[11,87],"sediments.":[12],"Since":[13],"most":[14],"microorganisms":[15],"that":[16,58,202,227],"can":[17,243],"oxidize":[18,146],"with":[20,119,134,157,183],"nitrate":[21,123],"require":[22],"an":[23],"additional":[24],"organic":[25],"substrate":[26,74],"for":[27],"growth":[28,204,245],"or":[29],"sustained":[30],"oxidation,":[32],"the":[33,112,203,215,247],"energetic":[34,61],"benefits":[35,62],"of":[36,52,111,122,127,169,186,206,217,240,249],"NDFO":[37,59,242],"are":[38],"unclear.":[39],"The":[40],"may":[42],"also":[43],"be":[44,174],"self-limiting":[45],"batch":[47,88],"cultures":[48],"due":[49],"to":[50,96,101,197],"formation":[51,248],"Fe-oxide":[53],"cell":[54,78,251],"encrustations.":[55,79,252],"We":[56],"hypothesized":[57],"provides":[60],"via":[63],"mixotrophic":[65],"physiology":[66],"environments":[68],"where":[69],"cells":[70,130,143,162],"encounter":[71],"very":[72],"low":[73,184],"concentrations,":[75],"thereby":[76],"minimizing":[77],"Acidovorax":[80,207],"sp.":[81,208],"strain":[82,209],"2AN":[83,210],"was":[84,114,211,229],"incubated":[85],"reactors":[89],"defined":[92],"medium":[93],"containing":[94],"5":[95],"6":[97],"mM":[98,103,107],"NO\u2083\u207b,":[99,191],"8":[100],"9":[102],"Fe\u00b2\u207a,":[104,200],"and":[105,124,139,166,171,195,223],"1.5":[106],"acetate.":[108,128],"Almost":[109],"90%":[110],"oxidized":[115],"within":[116],"7":[117],"days":[118],"concomitant":[120],"reduction":[121],"complete":[125],"consumption":[126],"Batch-grown":[129],"became":[131],"heavily":[132],"encrusted":[133,161],"Fe(III)":[135],"oxyhydroxides,":[136],"lost":[137],"motility,":[138],"formed":[140],"aggregates.":[141],"Encrusted":[142],"could":[144,173],"neither":[145],"more":[147],"nor":[149],"utilize":[150],"further":[151,167],"acetate":[152,170],"additions.":[153],"In":[154],"similar":[155],"experiments":[156],"chelated":[158],"iron":[159],"(Fe(II)-EDTA),":[160],"were":[163],"not":[164],"produced,":[165],"additions":[168],"Fe(II)-EDTA":[172],"oxidized.":[175],"Experiments":[176],"using":[177],"novel,":[179],"continuous-flow":[180],"culture":[181],"system":[182],"concentrations":[185,239],"substrate,":[187],"e.g.,":[188],"100":[189],"\u03bcM":[190,193,199],"20":[192],"acetate,":[194],"50":[196],"250":[198],"showed":[201,226],"yield":[205],"always":[212],"greater":[213],"presence":[216],"than":[219],"its":[221],"absence,":[222],"electron":[224],"microscopy":[225],"encrustation":[228],"minimized.":[230],"Our":[231],"results":[232],"provide":[233],"evidence":[234],"that,":[235],"under":[236],"environmentally":[237],"relevant":[238],"substrates,":[241],"enhance":[244],"without":[246],"growth-limiting":[250]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":11}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}
