{"id":"https://openalex.org/W1989228404","doi":"https://doi.org/10.1016/s0076-6879(97)77022-8","title":"[20] VERIFY3D: Assessment of protein models with three-dimensional profiles","display_name":"[20] VERIFY3D: Assessment of protein models with three-dimensional profiles","publication_year":1997,"publication_date":"1997-01-01","ids":{"openalex":"https://openalex.org/W1989228404","doi":"https://doi.org/10.1016/s0076-6879(97)77022-8","mag":"1989228404","pmid":"https://pubmed.ncbi.nlm.nih.gov/9379925"},"language":"en","primary_location":{"id":"doi:10.1016/s0076-6879(97)77022-8","doi":"https://doi.org/10.1016/s0076-6879(97)77022-8","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0076-6879(97)77022-8","pdf_url":null,"source":{"id":"https://openalex.org/S182211142","display_name":"Methods in enzymology on CD-ROM/Methods in enzymology","issn_l":"0076-6879","issn":["0076-6879","1079-2376","1557-7988"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-3"],"host_organization":"https://openalex.org/P4310319955","host_organization_name":"Academic Press","host_organization_lineage":["https://openalex.org/P4310319955","https://openalex.org/P4310320990"],"host_organization_lineage_names":["Academic Press","Elsevier BV"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Enzymology","raw_type":"book-chapter"},"volume":{"id":"https://openalex.org/W4206339473","display_name":"Macromolecular Crystallography Part B"},"type":"book-chapter","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080439570","display_name":"David S Eisenberg","orcid":"https://orcid.org/0000-0003-2432-5419","observed_orcids":["https://orcid.org/0000-0003-2432-5419"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Eisenberg","raw_affiliation_strings":["Laboratory of Structural Biology and Molecular Medicine, University of California, Los Angeles 90095, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Structural Biology and Molecular Medicine, University of California, Los Angeles 90095, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006350147","display_name":"Roland L\u00fcthy","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Roland L\u00fcthy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5017304834","display_name":"James U. Bowie","orcid":"https://orcid.org/0000-0003-2249-5908","observed_orcids":["https://orcid.org/0000-0003-2249-5908"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James U. Bowie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.8584,"has_fulltext":false,"cited_by_count":2212,"citation_normalized_percentile":{"value":0.91063562,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"277","issue":null,"first_page":"396","last_page":"404"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6215999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6215999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.3765000104904175,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-structure-validation","display_name":"protein structure validation","score":0.6690000295639038},{"id":"https://openalex.org/keywords/model-evaluation","display_name":"model evaluation","score":0.6050000190734863},{"id":"https://openalex.org/keywords/nmr-structure-determination","display_name":"NMR structure determination","score":0.7440000176429749},{"id":"https://openalex.org/keywords/protein-structure-model","display_name":"protein structure model","score":0.3330000042915344}],"concepts":[{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.7492303848266602},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5548742413520813},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5161598920822144},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47246360778808594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3698776960372925},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.2939055562019348},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2716798782348633}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006422","descriptor_name":"Hemerythrin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007135","descriptor_name":"Immunoglobulin Variable Region","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012273","descriptor_name":"Ribulose-Bisphosphate Carboxylase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/s0076-6879(97)77022-8","doi":"https://doi.org/10.1016/s0076-6879(97)77022-8","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0076-6879(97)77022-8","pdf_url":null,"source":{"id":"https://openalex.org/S182211142","display_name":"Methods in enzymology on CD-ROM/Methods in enzymology","issn_l":"0076-6879","issn":["0076-6879","1079-2376","1557-7988"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-3"],"host_organization":"https://openalex.org/P4310319955","host_organization_name":"Academic Press","host_organization_lineage":["https://openalex.org/P4310319955","https://openalex.org/P4310320990"],"host_organization_lineage_names":["Academic Press","Elsevier BV"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Enzymology","raw_type":"book-chapter"},{"id":"pmid:9379925","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/9379925","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in enzymology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1535631466","https://openalex.org/W1966041739","https://openalex.org/W1967690058","https://openalex.org/W1990862775","https://openalex.org/W1992323841","https://openalex.org/W1996607909","https://openalex.org/W2007697641","https://openalex.org/W2011495938","https://openalex.org/W2013083986","https://openalex.org/W2019322141","https://openalex.org/W2021409719","https://openalex.org/W2026506773","https://openalex.org/W2027978582","https://openalex.org/W2071486470","https://openalex.org/W2102993309","https://openalex.org/W2106154817","https://openalex.org/W4234475175","https://openalex.org/W4246356731"],"related_works":["https://openalex.org/W2071486470","https://openalex.org/W1498549906","https://openalex.org/W2019322141","https://openalex.org/W4232898906","https://openalex.org/W2429278175","https://openalex.org/W2082332011","https://openalex.org/W1532816361","https://openalex.org/W1969663541","https://openalex.org/W2109639066","https://openalex.org/W2023829406"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":98},{"year":2025,"cited_by_count":114},{"year":2024,"cited_by_count":123},{"year":2023,"cited_by_count":129},{"year":2022,"cited_by_count":194},{"year":2021,"cited_by_count":175},{"year":2020,"cited_by_count":162},{"year":2019,"cited_by_count":148},{"year":2018,"cited_by_count":115},{"year":2017,"cited_by_count":107},{"year":2016,"cited_by_count":108},{"year":2015,"cited_by_count":98},{"year":2014,"cited_by_count":98},{"year":2013,"cited_by_count":88},{"year":2012,"cited_by_count":69}],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2016-06-24T00:00:00"}