{"id":"https://openalex.org/W1986015812","doi":"https://doi.org/10.1371/journal.pone.0103441","title":"Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification","display_name":"Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification","publication_year":2014,"publication_date":"2014-07-31","ids":{"openalex":"https://openalex.org/W1986015812","doi":"https://doi.org/10.1371/journal.pone.0103441","mag":"1986015812","pmid":"https://pubmed.ncbi.nlm.nih.gov/25077800","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4117525"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0103441","doi":"https://doi.org/10.1371/journal.pone.0103441","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0103441","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0103441&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0103441&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046205786","display_name":"L\u0151rinc S\u00e1ndor Pongor","orcid":"https://orcid.org/0000-0001-5917-4628","observed_orcids":["https://orcid.org/0000-0001-5917-4628"]},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I31882830","display_name":"P\u00e1zm\u00e1ny P\u00e9ter Catholic University","ror":"https://ror.org/05v9kya57","country_code":"HU","type":"education","lineage":["https://openalex.org/I31882830"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"L\u0151rinc S. Pongor","raw_affiliation_strings":["Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary; 2nd Department of Pediatrics, Semmelweis University, Budapest, Hungary","2nd Department of Pediatrics, Semmelweis University, Budapest, Hungary","Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary; 2nd Department of Pediatrics, Semmelweis University, Budapest, Hungary","institution_ids":["https://openalex.org/I101202996","https://openalex.org/I31882830"]},{"raw_affiliation_string":"2nd Department of Pediatrics, Semmelweis University, Budapest, Hungary","institution_ids":["https://openalex.org/I101202996"]},{"raw_affiliation_string":"Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary","institution_ids":["https://openalex.org/I31882830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081637994","display_name":"Roberto Vera Alvarez","orcid":"https://orcid.org/0000-0002-4108-5982","observed_orcids":["https://orcid.org/0000-0002-4108-5982"]},"institutions":[{"id":"https://openalex.org/I31882830","display_name":"P\u00e1zm\u00e1ny P\u00e9ter Catholic University","ror":"https://ror.org/05v9kya57","country_code":"HU","type":"education","lineage":["https://openalex.org/I31882830"]},{"id":"https://openalex.org/I91080651","display_name":"International Centre for Genetic Engineering and Biotechnology","ror":"https://ror.org/043bgf219","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I91080651"]}],"countries":["HU","IT"],"is_corresponding":false,"raw_author_name":"Roberto Vera","raw_affiliation_strings":["Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary; Protein Structure and Bioinformatics Group, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy","Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary","Protein Structure and Bioinformatics Group, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary; Protein Structure and Bioinformatics Group, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy","institution_ids":["https://openalex.org/I31882830","https://openalex.org/I91080651"]},{"raw_affiliation_string":"Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary","institution_ids":["https://openalex.org/I31882830"]},{"raw_affiliation_string":"Protein Structure and Bioinformatics Group, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy","institution_ids":["https://openalex.org/I91080651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006056998","display_name":"Bal\u00e1zs Ligeti","orcid":"https://orcid.org/0000-0003-0301-0434","observed_orcids":["https://orcid.org/0000-0003-0301-0434"]},"institutions":[{"id":"https://openalex.org/I31882830","display_name":"P\u00e1zm\u00e1ny P\u00e9ter Catholic University","ror":"https://ror.org/05v9kya57","country_code":"HU","type":"education","lineage":["https://openalex.org/I31882830"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Bal\u00e1zs Ligeti","raw_affiliation_strings":["Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, P\u00e1zm\u00e1ny P\u00e9ter Catholic University, Budapest, Hungary","institution_ids":["https://openalex.org/I31882830"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5046205786"],"corresponding_institution_ids":["https://openalex.org/I101202996","https://openalex.org/I31882830"],"apc_list":{"value":2382,"currency":"USD","value_usd":2382},"apc_paid":{"value":2382,"currency":"USD","value_usd":2382},"fwci":0.5206,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.56919944,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":97},"biblio":{"volume":"9","issue":"7","first_page":"e103441","last_page":"e103441"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.6679999828338623},{"id":"https://openalex.org/keywords/pathogen-identification","display_name":"pathogen identification","score":0.777999997138977},{"id":"https://openalex.org/keywords/taxonomic-assignment","display_name":"taxonomic assignment","score":0.49300000071525574},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"sequence alignment","score":0.6899999976158142},{"id":"https://openalex.org/keywords/bowtie2","display_name":"Bowtie2","score":0.9390000104904175},{"id":"https://openalex.org/keywords/reference-sequence-database","display_name":"reference sequence database","score":0.7229999899864197},{"id":"https://openalex.org/keywords/strain-level-identification","display_name":"strain-level identification","score":0.6819999814033508},{"id":"https://openalex.org/keywords/desktop-computing","display_name":"desktop computing","score":0.5059999823570251},{"id":"https://openalex.org/keywords/open-source-software","display_name":"open source software","score":0.5640000104904175},{"id":"https://openalex.org/keywords/functional-gene-annotation","display_name":"functional gene annotation","score":0.5429999828338623}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8063405752182007},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6477701663970947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6373841762542725},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.47692984342575073},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.472801148891449},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.44457465410232544},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4302539527416229},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4068095088005066},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3368404507637024},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31306710839271545},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13765659928321838},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13481351733207703},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08838221430778503},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pone.0103441","doi":"https://doi.org/10.1371/journal.pone.0103441","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0103441","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0103441&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3089863","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4117525","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:25077800","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25077800","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4117525","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC4117525/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.794.766","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.794.766","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/49/98/pone.0103441.PMC4117525.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:61c68f04868048e1ae46cf9d57e56620","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/61c68f04868048e1ae46cf9d57e56620","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 9, Iss 7, p e103441 (2014)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0103441","doi":"https://doi.org/10.1371/journal.pone.0103441","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0103441","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0103441&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321102","display_name":"Semmelweis Egyetem","ror":"https://ror.org/01g9ty582"},{"id":"https://openalex.org/F4320322192","display_name":"Magyar Tudom\u00e1nyos Akad\u00e9mia","ror":"https://ror.org/02ks8qq67"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1986015812.pdf","grobid_xml":"https://content.openalex.org/works/W1986015812.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1539221976","https://openalex.org/W1997272729","https://openalex.org/W2000586119","https://openalex.org/W2021497754","https://openalex.org/W2039980038","https://openalex.org/W2046179517","https://openalex.org/W2055503200","https://openalex.org/W2055666215","https://openalex.org/W2078689689","https://openalex.org/W2093931624","https://openalex.org/W2096525273","https://openalex.org/W2103017472","https://openalex.org/W2103441770","https://openalex.org/W2105153175","https://openalex.org/W2108234281","https://openalex.org/W2108718991","https://openalex.org/W2116406307","https://openalex.org/W2116895571","https://openalex.org/W2123837003","https://openalex.org/W2131026689","https://openalex.org/W2131479294","https://openalex.org/W2140184534","https://openalex.org/W2144550002","https://openalex.org/W2147481951","https://openalex.org/W2148181108","https://openalex.org/W2154364831","https://openalex.org/W2155606054","https://openalex.org/W2156428955","https://openalex.org/W2158714788","https://openalex.org/W2170250563","https://openalex.org/W2170551349","https://openalex.org/W2901608006","https://openalex.org/W4238718120","https://openalex.org/W4247053599","https://openalex.org/W4247927165"],"related_works":["https://openalex.org/W2952859099","https://openalex.org/W4308587960","https://openalex.org/W2042056700","https://openalex.org/W1953836362","https://openalex.org/W3116118967","https://openalex.org/W2611700164","https://openalex.org/W2100561213","https://openalex.org/W1972166243","https://openalex.org/W7100219532","https://openalex.org/W7098534875"],"abstract_inverted_index":{"Next":[0],"generation":[1],"sequencing":[2,96],"(NGS)":[3],"of":[4,19,115,176],"metagenomic":[5,168],"samples":[6],"is":[7,44,132,143,187],"becoming":[8],"a":[9,37,67,73,173],"standard":[10],"approach":[11],"to":[12,29,158,167],"detect":[13],"individual":[14],"species":[15,39],"or":[16,40,128],"pathogenic":[17],"strains":[18],"microorganisms.":[20],"Computer":[21],"programs":[22],"used":[23],"in":[24,189],"the":[25,80,135,147,177],"NGS":[26],"community":[27],"have":[28,56],"balance":[30],"between":[31],"speed":[32],"and":[33,35,47,72,93,106,180,197],"sensitivity":[34],"as":[36,85,87,103],"result,":[38],"strain":[41,183],"level":[42,184],"identification":[43],"often":[45,107],"inaccurate":[46],"low":[48],"abundance":[49],"pathogens":[50],"can":[51,123,154,171,181],"sometimes":[52],"be":[53,124,155],"missed.":[54],"We":[55,78,98],"developed":[57],"Taxoner,":[58],"an":[59],"open":[60],"source,":[61],"taxon":[62],"assignment":[63],"pipeline":[64],"that":[65,100,121,137],"includes":[66],"fast":[68],"aligner":[69],"(e.g.":[70],"Bowtie2)":[71],"comprehensive":[74,148],"DNA":[75],"sequence":[76],"database.":[77,150],"tested":[79],"program":[81],"on":[82,126],"simulated":[83],"datasets":[84],"well":[86,104],"experimental":[88],"data":[89],"from":[90],"Illumina,":[91],"IonTorrent,":[92],"Roche":[94],"454":[95],"platforms.":[97],"found":[99],"Taxoner":[101,131,170,186],"performs":[102],"as,":[105],"better":[108],"than":[109,134],"BLAST,":[110],"but":[111,142],"requires":[112],"two":[113],"orders":[114],"magnitude":[116],"less":[117],"running":[118],"time":[119],"meaning":[120],"it":[122,153],"run":[125],"desktop":[127],"laptop":[129],"computers.":[130],"slower":[133],"approaches":[136],"use":[138],"small":[139,162],"marker":[140],"databases":[141],"more":[144],"sensitive":[145],"due":[146],"reference":[149],"In":[151],"addition,":[152],"easily":[156],"tuned":[157],"specific":[159],"applications":[160,203],"using":[161],"tailored":[163],"databases.":[164],"When":[165],"applied":[166],"datasets,":[169],"provide":[172,182],"functional":[174],"summary":[175],"genes":[178],"mapped":[179],"identification.":[185],"written":[188],"C":[190],"for":[191,201],"Linux":[192],"operating":[193],"systems.":[194],"The":[195],"code":[196],"documentation":[198],"are":[199],"available":[200],"research":[202],"at":[204],"http://code.google.com/p/taxoner.":[205]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}