{"id":"https://openalex.org/W1983198643","doi":"https://doi.org/10.1038/srep00170","title":"Bacterial biogeography of the human digestive tract","display_name":"Bacterial biogeography of the human digestive tract","publication_year":2011,"publication_date":"2011-11-25","ids":{"openalex":"https://openalex.org/W1983198643","doi":"https://doi.org/10.1038/srep00170","mag":"1983198643","pmid":"https://pubmed.ncbi.nlm.nih.gov/22355685","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3240969"},"language":"en","primary_location":{"id":"doi:10.1038/srep00170","doi":"https://doi.org/10.1038/srep00170","is_oa":true,"landing_page_url":"https://doi.org/10.1038/srep00170","pdf_url":"https://www.nature.com/articles/srep00170.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/srep00170.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039882871","display_name":"Jennifer C. Stearns","orcid":"https://orcid.org/0000-0002-8603-6607","observed_orcids":["https://orcid.org/0000-0002-8603-6607"]},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jennifer C. Stearns","raw_affiliation_strings":["Department of Biology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076348377","display_name":"Michael D. J. Lynch","orcid":"https://orcid.org/0000-0002-9332-747X","observed_orcids":["https://orcid.org/0000-0002-9332-747X"]},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]},{"id":"https://openalex.org/I75381157","display_name":"Wilfrid Laurier University","ror":"https://ror.org/00fn7gb05","country_code":"CA","type":"education","lineage":["https://openalex.org/I75381157"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Michael D. J. Lynch","raw_affiliation_strings":["Department of Biology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada","Department of Biology, Wilfrid Laurier University, Waterloo, Ontario, N2L 3C5, Canada","Department of Biology, University of Waterloo, Waterloo, Canada","Department of Biology, Wilfrid Laurier University, Waterloo, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"Department of Biology, Wilfrid Laurier University, Waterloo, Ontario, N2L 3C5, Canada","institution_ids":["https://openalex.org/I75381157"]},{"raw_affiliation_string":"Department of Biology, University of Waterloo, Waterloo, Canada","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"Department of Biology, Wilfrid Laurier University, Waterloo, Canada","institution_ids":["https://openalex.org/I75381157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061093782","display_name":"Dilani Braziunas Senadheera","orcid":"https://orcid.org/0000-0003-1356-7842","observed_orcids":["https://orcid.org/0000-0003-1356-7842"]},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dilani B. Senadheera","raw_affiliation_strings":["Faculty of Dentistry, University of Toronto, Toronto, Ontario, M5G 1G6, Canada","Faculty of Dentistry, University of Toronto , Toronto, Canada "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Dentistry, University of Toronto, Toronto, Ontario, M5G 1G6, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Faculty of Dentistry, University of Toronto , Toronto, Canada ","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058781407","display_name":"Howard Charles Tenenbaum","orcid":"https://orcid.org/0009-0006-5363-544X","observed_orcids":["https://orcid.org/0009-0006-5363-544X"]},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Howard C. Tenenbaum","raw_affiliation_strings":["Faculty of Dentistry, University of Toronto, Toronto, Ontario, M5G 1G6, Canada","Faculty of Dentistry, University of Toronto , Toronto, Canada "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Dentistry, University of Toronto, Toronto, Ontario, M5G 1G6, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Faculty of Dentistry, University of Toronto , Toronto, Canada ","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041079016","display_name":"Michael B. Goldberg","orcid":"https://orcid.org/0009-0001-3463-2490","observed_orcids":["https://orcid.org/0009-0001-3463-2490"]},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Michael B. Goldberg","raw_affiliation_strings":["Faculty of Dentistry, University of Toronto, Toronto, Ontario, M5G 1G6, Canada","Faculty of Dentistry, University of Toronto , Toronto, Canada "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Dentistry, University of Toronto, Toronto, Ontario, M5G 1G6, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Faculty of Dentistry, University of Toronto , Toronto, Canada ","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014704682","display_name":"Dennis G. Cvitkovitch","orcid":"https://orcid.org/0000-0003-2490-6862","observed_orcids":["https://orcid.org/0000-0003-2490-6862"]},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dennis G. Cvitkovitch","raw_affiliation_strings":["Faculty of Dentistry, University of Toronto, Toronto, Ontario, M5G 1G6, Canada","Faculty of Dentistry, University of Toronto , Toronto, Canada "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Dentistry, University of Toronto, Toronto, Ontario, M5G 1G6, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Faculty of Dentistry, University of Toronto , Toronto, Canada ","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044062846","display_name":"Kenneth Croitoru","orcid":"https://orcid.org/0000-0003-1231-0180","observed_orcids":["https://orcid.org/0000-0003-1231-0180"]},"institutions":[{"id":"https://openalex.org/I1291836623","display_name":"Mount Sinai Hospital","ror":"https://ror.org/05deks119","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1291836623","https://openalex.org/I4210130843"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kenneth Croitoru","raw_affiliation_strings":["Department of Medicine, University of Toronto, Zane Cohen Center for Digestive Diseases, Mount Sinai Hospital, Toronto, Ontario, M5G 1X5, Canada","Department of Medicine, University of Toronto, Zane Cohen Center for Digestive Diseases, Mount Sinai Hospital, Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of Toronto, Zane Cohen Center for Digestive Diseases, Mount Sinai Hospital, Toronto, Ontario, M5G 1X5, Canada","institution_ids":["https://openalex.org/I1291836623","https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medicine, University of Toronto, Zane Cohen Center for Digestive Diseases, Mount Sinai Hospital, Toronto, Canada","institution_ids":["https://openalex.org/I1291836623","https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057232313","display_name":"Gabriel Moreno\u2010Hagelsieb","orcid":"https://orcid.org/0000-0002-2457-4450","observed_orcids":["https://orcid.org/0000-0002-2457-4450"]},"institutions":[{"id":"https://openalex.org/I75381157","display_name":"Wilfrid Laurier University","ror":"https://ror.org/00fn7gb05","country_code":"CA","type":"education","lineage":["https://openalex.org/I75381157"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gabriel Moreno-Hagelsieb","raw_affiliation_strings":["Department of Biology, Wilfrid Laurier University, Waterloo, Ontario, N2L 3C5, Canada","Department of Biology Wilfrid Laurier University Waterloo Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Wilfrid Laurier University, Waterloo, Ontario, N2L 3C5, Canada","institution_ids":["https://openalex.org/I75381157"]},{"raw_affiliation_string":"Department of Biology Wilfrid Laurier University Waterloo Canada","institution_ids":["https://openalex.org/I75381157"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022946838","display_name":"Josh David Neufeld","orcid":"https://orcid.org/0000-0002-8722-8571","observed_orcids":["https://orcid.org/0000-0002-8722-8571"]},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Josh D. Neufeld","raw_affiliation_strings":["Department of Biology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada","Department of Biology , University of Waterloo , Waterloo , Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"Department of Biology , University of Waterloo , Waterloo , Canada","institution_ids":["https://openalex.org/I151746483"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5022946838"],"corresponding_institution_ids":["https://openalex.org/I151746483"],"apc_list":{"value":2690,"currency":"USD","value_usd":2690},"apc_paid":{"value":2690,"currency":"USD","value_usd":2690},"fwci":7.8106,"has_fulltext":true,"cited_by_count":411,"citation_normalized_percentile":{"value":0.9859389,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"1","issue":"1","first_page":"170","last_page":"170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.00279999990016222,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/human-gut-microbiota","display_name":"human gut microbiome","score":0.8180000185966492},{"id":"https://openalex.org/keywords/bacterial-biogeography","display_name":"bacterial biogeography","score":0.9419999718666077},{"id":"https://openalex.org/keywords/gastrointestinal-tract","display_name":"gastrointestinal tract","score":0.7630000114440918},{"id":"https://openalex.org/keywords/16s-rrna-gene-sequencing","display_name":"16S rRNA gene sequencing","score":0.8519999980926514},{"id":"https://openalex.org/keywords/operational-taxonomic-units","display_name":"operational taxonomic units","score":0.8840000033378601},{"id":"https://openalex.org/keywords/oral-microbiota","display_name":"oral microbiota","score":0.7039999961853027},{"id":"https://openalex.org/keywords/colonic-microbiota","display_name":"colonic microbiota","score":0.8460000157356262},{"id":"https://openalex.org/keywords/stool-microbiota","display_name":"stool microbiome","score":0.8519999980926514},{"id":"https://openalex.org/keywords/faecalibacterium-prausnitzii","display_name":"Faecalibacterium prausnitzii","score":0.8500000238418579},{"id":"https://openalex.org/keywords/microbial-diversity","display_name":"microbial diversity","score":0.625},{"id":"https://openalex.org/keywords/healthy-volunteers","display_name":"healthy volunteers","score":0.4050000011920929}],"concepts":[{"id":"https://openalex.org/C91066513","wikidata":"https://www.wikidata.org/wiki/Q38348","display_name":"Phylum","level":3,"score":0.7363256216049194},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7309316396713257},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.6027249097824097},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5758228302001953},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5743423104286194},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.5041037797927856},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.4954339265823364},{"id":"https://openalex.org/C123575903","wikidata":"https://www.wikidata.org/wiki/Q52106","display_name":"Biogeography","level":2,"score":0.4349461793899536},{"id":"https://openalex.org/C98722961","wikidata":"https://www.wikidata.org/wiki/Q7189436","display_name":"Phylogenetic diversity","level":4,"score":0.4347875118255615},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.4290022850036621},{"id":"https://openalex.org/C2779825944","wikidata":"https://www.wikidata.org/wiki/Q7097792","display_name":"Operational taxonomic unit","level":4,"score":0.4212772250175476},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.4176982343196869},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3357493281364441},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.26898813247680664},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.24454796314239502},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1776410937309265},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15159249305725098}],"mesh":[{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1038/srep00170","doi":"https://doi.org/10.1038/srep00170","is_oa":true,"landing_page_url":"https://doi.org/10.1038/srep00170","pdf_url":"https://www.nature.com/articles/srep00170.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3240969","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3240969","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sci Rep","raw_type":"Text"},{"id":"pmid:22355685","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22355685","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific reports","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1038/srep00170","doi":"https://doi.org/10.1038/srep00170","is_oa":true,"landing_page_url":"https://doi.org/10.1038/srep00170","pdf_url":"https://www.nature.com/articles/srep00170.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7246000170707703,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1983198643.pdf","grobid_xml":"https://content.openalex.org/works/W1983198643.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W346827628","https://openalex.org/W1512323415","https://openalex.org/W1587026990","https://openalex.org/W1964244234","https://openalex.org/W1971415551","https://openalex.org/W1974427319","https://openalex.org/W1980914602","https://openalex.org/W1981959283","https://openalex.org/W1988925586","https://openalex.org/W1989889539","https://openalex.org/W1991103014","https://openalex.org/W2017529960","https://openalex.org/W2019094601","https://openalex.org/W2023506796","https://openalex.org/W2037283548","https://openalex.org/W2041136224","https://openalex.org/W2047774330","https://openalex.org/W2052969143","https://openalex.org/W2055294433","https://openalex.org/W2056246809","https://openalex.org/W2066452478","https://openalex.org/W2072417345","https://openalex.org/W2072970694","https://openalex.org/W2087560225","https://openalex.org/W2087671769","https://openalex.org/W2088347903","https://openalex.org/W2093062709","https://openalex.org/W2093891969","https://openalex.org/W2103805072","https://openalex.org/W2105329815","https://openalex.org/W2107414352","https://openalex.org/W2107805776","https://openalex.org/W2111858111","https://openalex.org/W2120472610","https://openalex.org/W2121748291","https://openalex.org/W2124351063","https://openalex.org/W2125826054","https://openalex.org/W2126218947","https://openalex.org/W2129360103","https://openalex.org/W2137061941","https://openalex.org/W2141125135","https://openalex.org/W2141691140","https://openalex.org/W2149064303","https://openalex.org/W2149573313","https://openalex.org/W2150914285","https://openalex.org/W2152885278","https://openalex.org/W2156125289","https://openalex.org/W2161430581","https://openalex.org/W2163286994","https://openalex.org/W2163295736","https://openalex.org/W2168104108","https://openalex.org/W2169330513","https://openalex.org/W4230096730"],"related_works":["https://openalex.org/W2074095468","https://openalex.org/W1981959283","https://openalex.org/W7097983444","https://openalex.org/W2165799971","https://openalex.org/W2029943794","https://openalex.org/W7095570478","https://openalex.org/W2170196186","https://openalex.org/W2948347642","https://openalex.org/W2120083902","https://openalex.org/W1988330677"],"abstract_inverted_index":{"We":[0],"present":[1],"bacterial":[2,23],"biogeography":[3],"as":[4],"sampled":[5],"from":[6,77,96],"the":[7,56,67,115,123,130,142],"human":[8,132,143],"gastrointestinal":[9],"tract":[10,134],"of":[11,22,62,100,122],"four":[12],"healthy":[13,131],"subjects.":[14],"This":[15,118],"study":[16],"generated":[17],">32":[18],"million":[19],"paired-end":[20],"sequences":[21],"16S":[24],"rRNA":[25],"genes":[26],"(V3":[27],"region)":[28],"representing":[29],">95,000":[30],"unique":[31],"operational":[32],"taxonomic":[33],"units":[34],"(OTUs;":[35],"97%":[36],"similarity":[37],"clusters),":[38],"with":[39,111],">99%":[40],"Good's":[41],"coverage":[42],"for":[43],"all":[44,105],"samples.":[45,58],"The":[46,59],"highest":[47],"OTU":[48,84],"richness":[49],"and":[50,74,93,107,114,125,148],"phylogenetic":[51],"diversity":[52],"was":[53],"found":[54,128],"in":[55,79],"mouth":[57],"microbial":[60],"communities":[61],"multiple":[63],"biopsy":[64],"sites":[65],"within":[66,72],"colon":[68,92],"were":[69,102],"highly":[70],"similar":[71],"individuals":[73,106],"largely":[75],"distinct":[76],"those":[78],"stool.":[80],"Within":[81],"an":[82],"individual,":[83],"overlap":[85],"among":[86],"broad":[87],"site":[88],"definitions":[89],"(mouth,":[90],"stomach/duodenum,":[91],"stool)":[94],"ranged":[95],"32-110":[97],"OTUs,":[98],"25":[99],"which":[101],"common":[103],"to":[104,138,146],"included":[108],"OTUs":[109],"affiliated":[110],"Faecalibacterium":[112],"prasnitzii":[113],"TM7":[116],"phylum.":[117],"first":[119],"comprehensive":[120],"characterization":[121],"abundant":[124],"rare":[126],"microflora":[127],"along":[129],"digestive":[133],"represents":[135],"essential":[136],"groundwork":[137],"investigate":[139],"further":[140],"how":[141],"microbiome":[144],"relates":[145],"health":[147],"disease.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":47},{"year":2020,"cited_by_count":33},{"year":2019,"cited_by_count":32},{"year":2018,"cited_by_count":41},{"year":2017,"cited_by_count":40},{"year":2016,"cited_by_count":34},{"year":2015,"cited_by_count":31},{"year":2014,"cited_by_count":36},{"year":2013,"cited_by_count":26},{"year":2012,"cited_by_count":11}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}