{"id":"https://openalex.org/W1978211894","doi":"https://doi.org/10.1109/iccke.2011.6413332","title":"Genetic regulatory network inference using Recurrent Neural Networks trained by a multi agent system","display_name":"Genetic regulatory network inference using Recurrent Neural Networks trained by a multi agent system","publication_year":2011,"publication_date":"2011-10-01","ids":{"openalex":"https://openalex.org/W1978211894","doi":"https://doi.org/10.1109/iccke.2011.6413332","mag":"1978211894"},"language":"en","primary_location":{"id":"doi:10.1109/iccke.2011.6413332","doi":"https://doi.org/10.1109/iccke.2011.6413332","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccke.2011.6413332","pdf_url":null,"source":{"id":"https://openalex.org/S4306419235","display_name":"International Conference on Computer and Knowledge Engineering","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 1st International eConference on Computer and Knowledge Engineering (ICCKE)","raw_type":"proceedings-article"},"parent_works":[],"lineage":["https://openalex.org/W1978211894"],"child_works_count":0,"type":"conference-paper","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079462472","display_name":"Adel Ghazikhani","orcid":"https://orcid.org/0000-0003-2055-5209","observed_orcids":["https://orcid.org/0000-0003-2055-5209"]},"institutions":[{"id":"https://openalex.org/I86958956","display_name":"Ferdowsi University of Mashhad","ror":"https://ror.org/00g6ka752","country_code":"IR","type":"education","lineage":["https://openalex.org/I86958956"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Adel Ghazikhani","raw_affiliation_strings":["Computer Engineering Department, Ferdowsi University of Mashhad and Lecturer, Mashhad","Computer Engineering Department, Ferdowsi University Of Mashhad, Mashhad, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Engineering Department, Ferdowsi University of Mashhad and Lecturer, Mashhad","institution_ids":["https://openalex.org/I86958956"]},{"raw_affiliation_string":"Computer Engineering Department, Ferdowsi University Of Mashhad, Mashhad, Iran","institution_ids":["https://openalex.org/I86958956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068572005","display_name":"T. Akbarzadeh","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I86958956","display_name":"Ferdowsi University of Mashhad","ror":"https://ror.org/00g6ka752","country_code":"IR","type":"education","lineage":["https://openalex.org/I86958956"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"T. Mohammad Reza Akbarzadeh","raw_affiliation_strings":["Center for Applied research on Intelligent Systems and Soft Computing, Ferdowsi University of Mashhad, Iran","Center for Appl. Res. on Intell. Syst. & Soft Comput., Ferdowsi Univ. of Mashhad, Mashhad, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Applied research on Intelligent Systems and Soft Computing, Ferdowsi University of Mashhad, Iran","institution_ids":["https://openalex.org/I86958956"]},{"raw_affiliation_string":"Center for Appl. Res. on Intell. Syst. & Soft Comput., Ferdowsi Univ. of Mashhad, Mashhad, Iran","institution_ids":["https://openalex.org/I86958956"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069185272","display_name":"Reza Monsefi","orcid":"https://orcid.org/0000-0002-6434-5273","observed_orcids":["https://orcid.org/0000-0002-6434-5273"]},"institutions":[{"id":"https://openalex.org/I86958956","display_name":"Ferdowsi University of Mashhad","ror":"https://ror.org/00g6ka752","country_code":"IR","type":"education","lineage":["https://openalex.org/I86958956"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Reza Monsefi","raw_affiliation_strings":["Computer Engineering Department, Ferdowsi University of Mashhad and Lecturer, Mashhad","Computer Engineering Department, Ferdowsi University Of Mashhad, Mashhad, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Engineering Department, Ferdowsi University of Mashhad and Lecturer, Mashhad","institution_ids":["https://openalex.org/I86958956"]},{"raw_affiliation_string":"Computer Engineering Department, Ferdowsi University Of Mashhad, Mashhad, Iran","institution_ids":["https://openalex.org/I86958956"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I86958956"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"95","last_page":"99"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network-inference","display_name":"gene regulatory network inference","score":0.9990000128746033},{"id":"https://openalex.org/keywords/recurrent-neural-networks","display_name":"recurrent neural networks","score":0.9950000047683716},{"id":"https://openalex.org/keywords/multi-agent-systems","display_name":"multi-agent systems","score":0.9480000138282776},{"id":"https://openalex.org/keywords/particle-swarm-optimization","display_name":"particle swarm optimization","score":0.9729999899864197}],"concepts":[{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.7613753080368042},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7258145213127136},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7106210589408875},{"id":"https://openalex.org/C85617194","wikidata":"https://www.wikidata.org/wiki/Q2072794","display_name":"Particle swarm optimization","level":2,"score":0.6605092287063599},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.589250385761261},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49894189834594727},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.4672059416770935},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4381653070449829},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4306011497974396},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4201151132583618},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3851029574871063},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10403507947921753},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08439216017723083},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07385948300361633},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccke.2011.6413332","doi":"https://doi.org/10.1109/iccke.2011.6413332","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccke.2011.6413332","pdf_url":null,"source":{"id":"https://openalex.org/S4306419235","display_name":"International Conference on Computer and Knowledge Engineering","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 1st International eConference on Computer and Knowledge Engineering (ICCKE)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1505885121","https://openalex.org/W1893505266","https://openalex.org/W1966502017","https://openalex.org/W1989652873","https://openalex.org/W1996264210","https://openalex.org/W2009969871","https://openalex.org/W2036338631","https://openalex.org/W2070712754","https://openalex.org/W2101792624","https://openalex.org/W2111627131","https://openalex.org/W2141239733","https://openalex.org/W2145790759","https://openalex.org/W2147814340","https://openalex.org/W2150355110","https://openalex.org/W2151098983","https://openalex.org/W2153355914","https://openalex.org/W2154808242","https://openalex.org/W2159706884","https://openalex.org/W2167803347"],"related_works":["https://openalex.org/W1970230237","https://openalex.org/W1989652873","https://openalex.org/W1521115751","https://openalex.org/W2365719367","https://openalex.org/W2116721327","https://openalex.org/W1536059328","https://openalex.org/W4238384696","https://openalex.org/W2625205216","https://openalex.org/W2738228877","https://openalex.org/W3022316789"],"abstract_inverted_index":{"We":[0,67,100],"propose":[1,68],"a":[2,24,53,64,69,92,106],"novel":[3],"algorithm":[4,104,108],"for":[5,40,73,115],"gene":[6],"regulatory":[7],"network":[8],"inference.":[9],"Gene":[10],"Regulatory":[11],"Network":[12,56],"(GRN)":[13],"inference":[14],"is":[15,59,63],"approximating":[16],"the":[17,45,79,102,122],"combined":[18],"effect":[19],"of":[20,51,78,88],"different":[21],"genes":[22],"in":[23],"specific":[25],"genome":[26],"data.":[27],"GRNs":[28],"are":[29,85],"nonlinear,":[30],"dynamic":[31],"and":[32,48],"noisy.":[33],"Time-series":[34],"data":[35],"has":[36],"been":[37],"frequently":[38],"used":[39],"GRN":[41],"modeling.":[42],"Due":[43],"to":[44],"function":[46],"approximation":[47],"feedback":[49],"nature":[50],"GRN,":[52],"Recurrent":[54],"Neural":[55],"(RNN)":[57],"model":[58],"used.":[60],"RNN":[61,74,111],"training":[62],"complicated":[65],"task.":[66],"multi":[70,81,93],"agent":[71,82],"system":[72,83],"training.":[75,116],"The":[76,117],"agents":[77],"proposed":[80,103],"trainer":[84],"separate":[86],"swarms":[87],"particles":[89],"building":[90],"up":[91],"population":[94],"Particle":[95],"Swarm":[96],"Optimization":[97],"(PSO)":[98],"algorithm.":[99],"compare":[101],"with":[105,112],"similar":[107],"that":[109],"uses":[110],"standard":[113],"PSO":[114],"results":[118],"show":[119],"improvements":[120],"using":[121],"E.":[123],"coli":[124],"SOS":[125],"dataset.":[126]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":2}],"updated_date":"2026-11-14T11:04:58.165337","created_date":"2016-06-24T00:00:00"}