{"id":"https://openalex.org/W1973633554","doi":"https://doi.org/10.1094/mpmi-22-1-0096","title":"Identification of Novel Type III Secretion Effectors in Xanthomonas oryzae pv. oryzae","display_name":"Identification of Novel Type III Secretion Effectors in Xanthomonas oryzae pv. oryzae","publication_year":2008,"publication_date":"2008-12-05","ids":{"openalex":"https://openalex.org/W1973633554","doi":"https://doi.org/10.1094/mpmi-22-1-0096","mag":"1973633554","pmid":"https://pubmed.ncbi.nlm.nih.gov/19061406"},"language":"en","primary_location":{"id":"doi:10.1094/mpmi-22-1-0096","doi":"https://doi.org/10.1094/mpmi-22-1-0096","is_oa":false,"landing_page_url":"https://doi.org/10.1094/mpmi-22-1-0096","pdf_url":null,"source":{"id":"https://openalex.org/S88768767","display_name":"Molecular Plant-Microbe Interactions","issn_l":"0894-0282","issn":["0894-0282","1943-7706"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320276","host_organization_name":"American Phytopathological Society","host_organization_lineage":["https://openalex.org/P4310320276"],"host_organization_lineage_names":["American Phytopathological Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Plant-Microbe Interactions\u00ae","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048104947","display_name":"Ayako Furutani","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ayako Furutani","raw_affiliation_strings":["National Institute of Agrobiological Sciences, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Agrobiological Sciences, Tsukuba, Japan","institution_ids":["https://openalex.org/I3018761593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035963269","display_name":"Minako Takaoka","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Minako Takaoka","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089960012","display_name":"Harumi Sanada","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Harumi Sanada","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yukari Noguchi","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yukari Noguchi","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019067628","display_name":"Takashi Oku","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Takashi Oku","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111542869","display_name":"Kazunori Tsuno","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kazunori Tsuno","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112060207","display_name":"Hirokazu Ochiai","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hirokazu Ochiai","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060121793","display_name":"Seiji Tsuge","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Seiji Tsuge","raw_affiliation_strings":["Corresponding author: S. Tsuge; Telephone: 81-75-703-5614; Fax: 81-75-703-5614; E-mail: \r\n                    E-mail Address:\r\n                    [email\u00a0protected]","E-mail: \n                    E-mail Address:\n                    [email\u00a0protected]","Fax: 81-75-703-5614","Telephone: 81-75-703-5614"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Corresponding author: S. Tsuge; Telephone: 81-75-703-5614; Fax: 81-75-703-5614; E-mail: \r\n                    E-mail Address:\r\n                    [email\u00a0protected]","institution_ids":[]},{"raw_affiliation_string":"E-mail: \n                    E-mail Address:\n                    [email\u00a0protected]","institution_ids":[]},{"raw_affiliation_string":"Fax: 81-75-703-5614","institution_ids":[]},{"raw_affiliation_string":"Telephone: 81-75-703-5614","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3000,"currency":"USD","value_usd":3000},"apc_paid":null,"fwci":11.8964,"has_fulltext":false,"cited_by_count":123,"citation_normalized_percentile":{"value":0.98618035,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"96","last_page":"106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/type-iii-secretion-system","display_name":"type III secretion system","score":0.9440000057220459},{"id":"https://openalex.org/keywords/xanthomonas-oryzae-pv-oryzae","display_name":"Xanthomonas oryzae pv. oryzae","score":0.9990000128746033},{"id":"https://openalex.org/keywords/bacterial-leaf-blight","display_name":"bacterial leaf blight","score":0.9300000071525574},{"id":"https://openalex.org/keywords/hrpx","display_name":"HrpX","score":0.7350000143051147},{"id":"https://openalex.org/keywords/effector-translocation","display_name":"effector translocation","score":0.8949999809265137},{"id":"https://openalex.org/keywords/xanthomonas-campestris-pv-vesicatoria","display_name":"Xanthomonas campestris pv. vesicatoria","score":0.9330000281333923},{"id":"https://openalex.org/keywords/plant-pathogenic-bacteria","display_name":"plant pathogenic bacteria","score":0.5690000057220459}],"concepts":[{"id":"https://openalex.org/C2776964914","wikidata":"https://www.wikidata.org/wiki/Q8043056","display_name":"Xanthomonas oryzae","level":3,"score":0.8102935552597046},{"id":"https://openalex.org/C2780785505","wikidata":"https://www.wikidata.org/wiki/Q16993531","display_name":"Xanthomonas oryzae pv. oryzae","level":4,"score":0.8063513040542603},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.631864070892334},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6286792755126953},{"id":"https://openalex.org/C49039625","wikidata":"https://www.wikidata.org/wiki/Q84230","display_name":"Secretion","level":2,"score":0.5250484943389893},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.504658579826355},{"id":"https://openalex.org/C2780746887","wikidata":"https://www.wikidata.org/wiki/Q140652","display_name":"Xanthomonas","level":3,"score":0.4700685143470764},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.45956093072891235},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.261816143989563},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.14205321669578552},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.12985363602638245},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09883251786231995},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.0885067880153656},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.03738096356391907}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020133","descriptor_name":"Reverse Transcriptase Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1094/mpmi-22-1-0096","doi":"https://doi.org/10.1094/mpmi-22-1-0096","is_oa":false,"landing_page_url":"https://doi.org/10.1094/mpmi-22-1-0096","pdf_url":null,"source":{"id":"https://openalex.org/S88768767","display_name":"Molecular Plant-Microbe Interactions","issn_l":"0894-0282","issn":["0894-0282","1943-7706"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","jufo-1","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320276","host_organization_name":"American Phytopathological Society","host_organization_lineage":["https://openalex.org/P4310320276"],"host_organization_lineage_names":["American Phytopathological Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Plant-Microbe Interactions\u00ae","raw_type":"journal-article"},{"id":"pmid:19061406","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19061406","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular plant-microbe interactions : MPMI","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:5560911cc6894d6f815dfcffbe714f1d","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/5560911cc6894d6f815dfcffbe714f1d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Molecular Plant-Microbe Interactions, Vol 22, Iss 1, Pp 96-106 (2009)","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6875,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310466","display_name":"Universit\u00e4t Basel","ror":"https://ror.org/02s6k3f65"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W140237455","https://openalex.org/W1483105698","https://openalex.org/W1524666565","https://openalex.org/W1555021163","https://openalex.org/W1564372169","https://openalex.org/W1575591809","https://openalex.org/W1576616886","https://openalex.org/W1691665820","https://openalex.org/W1899522406","https://openalex.org/W1980079387","https://openalex.org/W1983124032","https://openalex.org/W1984654391","https://openalex.org/W1986921956","https://openalex.org/W1992695319","https://openalex.org/W2005528863","https://openalex.org/W2009961953","https://openalex.org/W2011586678","https://openalex.org/W2021133277","https://openalex.org/W2035974443","https://openalex.org/W2047389810","https://openalex.org/W2048959467","https://openalex.org/W2050294818","https://openalex.org/W2054479383","https://openalex.org/W2057238625","https://openalex.org/W2059364869","https://openalex.org/W2060344559","https://openalex.org/W2062584177","https://openalex.org/W2062688070","https://openalex.org/W2066203685","https://openalex.org/W2070174618","https://openalex.org/W2080315424","https://openalex.org/W2084583230","https://openalex.org/W2091191001","https://openalex.org/W2092419504","https://openalex.org/W2095619657","https://openalex.org/W2096730875","https://openalex.org/W2097034177","https://openalex.org/W2097074038","https://openalex.org/W2098567697","https://openalex.org/W2100836382","https://openalex.org/W2101783575","https://openalex.org/W2101997742","https://openalex.org/W2108285818","https://openalex.org/W2112262471","https://openalex.org/W2112596893","https://openalex.org/W2113512909","https://openalex.org/W2114285279","https://openalex.org/W2117956345","https://openalex.org/W2121672428","https://openalex.org/W2122351989","https://openalex.org/W2122743214","https://openalex.org/W2127135538","https://openalex.org/W2129777626","https://openalex.org/W2131705791","https://openalex.org/W2135238551","https://openalex.org/W2135413308","https://openalex.org/W2135554057","https://openalex.org/W2135999147","https://openalex.org/W2140612547","https://openalex.org/W2142182104","https://openalex.org/W2152518209","https://openalex.org/W2155868153","https://openalex.org/W2156506633","https://openalex.org/W2157708426","https://openalex.org/W2158326536","https://openalex.org/W2160679365","https://openalex.org/W2161046065","https://openalex.org/W2167120169","https://openalex.org/W2330725781","https://openalex.org/W2331589689","https://openalex.org/W2696762266","https://openalex.org/W7097930909"],"related_works":["https://openalex.org/W2049327743","https://openalex.org/W1728041280","https://openalex.org/W7163330585","https://openalex.org/W7098831064","https://openalex.org/W2886133558","https://openalex.org/W2987426833","https://openalex.org/W2742844218","https://openalex.org/W2100700006","https://openalex.org/W2387905545","https://openalex.org/W2084583230"],"abstract_inverted_index":{"Many":[0],"gram-negative":[1],"bacteria":[2,111],"secrete":[3],"so-called":[4],"effector":[5,73,182],"proteins":[6,59,90],"via":[7],"a":[8,94,166],"type":[9],"III":[10],"secretion":[11,175,202],"(T3S)":[12],"system.":[13,150],"Through":[14],"genome":[15],"screening":[16],"for":[17,84],"genes":[18,48],"encoding":[19],"potential":[20],"T3S":[21,42,67,95,149,171],"effectors,":[22],"60":[23],"candidates":[24,74],"were":[25,91,103,114,120,128,137],"selected":[26],"from":[27],"rice":[28],"pathogen":[29],"Xanthomonas":[30,124],"oryzae":[31,33,162],"pv.":[32,154,163],"MAFF311018":[34],"using":[35],"these":[36,99,135],"criteria:":[37],"i)":[38],"homologs":[39,104],"of":[40,69,105,117,145,178,203],"known":[41,106],"effectors":[43,107,119,136,146],"in":[44,93,108,123,139,160,169,185,200],"plant-pathogenic":[45,110],"bacteria,":[46],"ii)":[47],"with":[49,60,66,76],"expression":[50],"regulated":[51],"by":[52],"hrp":[53],"regulatory":[54],"protein":[55],"HrpX,":[56],"or":[57],"iii)":[58],"N-terminal":[61],"amino":[62],"acid":[63],"patterns":[64],"associated":[65],"substrates":[68,172],"Pseudomonas":[70],"syringae.":[71],"Of":[72,98],"tested":[75],"the":[77,118,148,174,204],"Bordetella":[78],"pertussis":[79],"calmodulin-dependent":[80],"adenylate":[81],"cyclase":[82],"reporter":[83],"translocation":[85],"into":[86],"plant":[87],"cells,":[88],"16":[89,100],"translocated":[92],"system-dependent":[96],"manner.":[97],"proteins,":[101],"nine":[102],"other":[109],"and":[112,147,157,188,195],"seven":[113],"not.":[115],"Most":[116],"widely":[121,198],"conserved":[122],"spp.;":[125],"however,":[126],"some":[127],"specific":[129],"to":[130,173],"X.":[131,152,161],"oryzae.":[132],"Interestingly,":[133],"all":[134,179],"expressed":[138],"an":[140],"HrpX-dependent":[141],"manner,":[142],"suggesting":[143],"coregulation":[144],"In":[151],"campestris":[153],"vesicatoria,":[155],"HpaB":[156,194],"HpaC":[158],"(HpaP":[159],"oryzae)":[164],"have":[165],"central":[167],"role":[168],"recruiting":[170],"apparatus.":[176],"Secretion":[177],"but":[180],"one":[181],"was":[183],"reduced":[184],"both":[186],"HpaB()":[187],"HpaP()":[189],"mutant":[190],"strains,":[191],"indicating":[192],"that":[193],"HpaP":[196],"are":[197],"involved":[199],"efficient":[201],"effectors.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":7}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
