{"id":"https://openalex.org/W1970410554","doi":"https://doi.org/10.1093/nar/18.15.4507","title":"The complete nucleotide sequence of PEBV RNA2 reveals the presence of a novel open reading frame and provides insights into the structure of tobraviral subgenomic promoters","display_name":"The complete nucleotide sequence of PEBV RNA2 reveals the presence of a novel open reading frame and provides insights into the structure of tobraviral subgenomic promoters","publication_year":1990,"publication_date":"1990-08-11","ids":{"openalex":"https://openalex.org/W1970410554","doi":"https://doi.org/10.1093/nar/18.15.4507","mag":"1970410554","pmid":"https://pubmed.ncbi.nlm.nih.gov/2388830","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/331271"},"language":"en","primary_location":{"id":"doi:10.1093/nar/18.15.4507","doi":"https://doi.org/10.1093/nar/18.15.4507","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/18.15.4507","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://europepmc.org/pmc/articles/PMC331271","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036034739","display_name":"Matthew G. Goulden","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I100288624","display_name":"John Innes Centre","ror":"https://ror.org/055zmrh94","country_code":"GB","type":"facility","lineage":["https://openalex.org/I100288624","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"M.G. Goulden","raw_affiliation_strings":["Department of Virus Research, John Innes Institute for Plant Science Research, Norwich, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Virus Research, John Innes Institute for Plant Science Research, Norwich, UK","institution_ids":["https://openalex.org/I100288624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091482962","display_name":"George P. Lomonossoff","orcid":"https://orcid.org/0000-0003-0700-906X","observed_orcids":["https://orcid.org/0000-0003-0700-906X"]},"institutions":[{"id":"https://openalex.org/I100288624","display_name":"John Innes Centre","ror":"https://ror.org/055zmrh94","country_code":"GB","type":"facility","lineage":["https://openalex.org/I100288624","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"G.P. Lomonossoff","raw_affiliation_strings":["Department of Virus Research, John Innes Institute for Plant Science Research Colney Lane, Norwich NR4 7UH"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Virus Research, John Innes Institute for Plant Science Research Colney Lane, Norwich NR4 7UH","institution_ids":["https://openalex.org/I100288624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111906437","display_name":"Jeffrey W. Davies","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I100288624","display_name":"John Innes Centre","ror":"https://ror.org/055zmrh94","country_code":"GB","type":"facility","lineage":["https://openalex.org/I100288624","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J.W. Davies","raw_affiliation_strings":["Department of Virus Research, John Innes Institute for Plant Science Research Colney Lane, Norwich NR4 7UH"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Virus Research, John Innes Institute for Plant Science Research Colney Lane, Norwich NR4 7UH","institution_ids":["https://openalex.org/I100288624"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111513901","display_name":"K.R. Wood","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I100288624","display_name":"John Innes Centre","ror":"https://ror.org/055zmrh94","country_code":"GB","type":"facility","lineage":["https://openalex.org/I100288624","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"K.R. Wood","raw_affiliation_strings":["Department of Virus Research, John Innes Institute for Plant Science Research Colney Lane, Norwich NR4 7UH"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Virus Research, John Innes Institute for Plant Science Research Colney Lane, Norwich NR4 7UH","institution_ids":["https://openalex.org/I100288624"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5036034739"],"corresponding_institution_ids":["https://openalex.org/I100288624"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":null,"fwci":8.4601,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.97236839,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"18","issue":"15","first_page":"4507","last_page":"4512"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna2","display_name":"RNA2","score":0.7269999980926514},{"id":"https://openalex.org/keywords/nucleotide-sequence","display_name":"nucleotide sequence","score":0.7860000133514404},{"id":"https://openalex.org/keywords/open-reading-frames","display_name":"open reading frames","score":0.9169999957084656},{"id":"https://openalex.org/keywords/capsid-protein","display_name":"capsid protein","score":0.9419999718666077},{"id":"https://openalex.org/keywords/subgenomic-promoter","display_name":"subgenomic promoter","score":0.8709999918937683},{"id":"https://openalex.org/keywords/5-untranslated-region","display_name":"5' untranslated region","score":0.777999997138977},{"id":"https://openalex.org/keywords/3-noncoding-region","display_name":"3' non-coding region","score":0.9610000252723694},{"id":"https://openalex.org/keywords/secondary-structure","display_name":"secondary structure","score":0.5180000066757202},{"id":"https://openalex.org/keywords/protein-evolution","display_name":"protein evolution","score":0.4880000054836273},{"id":"https://openalex.org/keywords/plant-viruses","display_name":"plant viruses","score":0.41499999165534973}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9346986413002014},{"id":"https://openalex.org/C189819185","wikidata":"https://www.wikidata.org/wiki/Q384283","display_name":"Subgenomic mRNA","level":4,"score":0.8383338451385498},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.7648205757141113},{"id":"https://openalex.org/C84148353","wikidata":"https://www.wikidata.org/wiki/Q863908","display_name":"Nucleic acid sequence","level":3,"score":0.5869797468185425},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5696906447410583},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5693609714508057},{"id":"https://openalex.org/C554936623","wikidata":"https://www.wikidata.org/wiki/Q199657","display_name":"Reading (process)","level":2,"score":0.5199769139289856},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.4819716811180115},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.4676035940647125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42763572931289673},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.29602527618408203},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.23599156737327576},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.19140341877937317},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16869387030601501},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10214683413505554},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010942","descriptor_name":"Plant Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012367","descriptor_name":"RNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/18.15.4507","doi":"https://doi.org/10.1093/nar/18.15.4507","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/18.15.4507","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:271346","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC331271","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:331271","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/331271","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmid:2388830","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/2388830","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:271346","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC331271","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1582487838","https://openalex.org/W1601687245","https://openalex.org/W1871379961","https://openalex.org/W1973918679","https://openalex.org/W1973928866","https://openalex.org/W1974494244","https://openalex.org/W1974495774","https://openalex.org/W1977863283","https://openalex.org/W1986964736","https://openalex.org/W1998381926","https://openalex.org/W1998543284","https://openalex.org/W2003015231","https://openalex.org/W2009310436","https://openalex.org/W2015292449","https://openalex.org/W2019410656","https://openalex.org/W2019533629","https://openalex.org/W2025763720","https://openalex.org/W2032462421","https://openalex.org/W2046328043","https://openalex.org/W2048124712","https://openalex.org/W2052503008","https://openalex.org/W2073588834","https://openalex.org/W2074086678","https://openalex.org/W2076209762","https://openalex.org/W2082182038","https://openalex.org/W2091239909","https://openalex.org/W2093833429","https://openalex.org/W2095574283","https://openalex.org/W2101464105","https://openalex.org/W2104748973","https://openalex.org/W2111632147","https://openalex.org/W2126505139","https://openalex.org/W2132841974","https://openalex.org/W2138270253","https://openalex.org/W2174347170","https://openalex.org/W2397950895"],"related_works":["https://openalex.org/W2020592963","https://openalex.org/W1964807451","https://openalex.org/W1985097441","https://openalex.org/W2025588061","https://openalex.org/W2397605063","https://openalex.org/W2183525489","https://openalex.org/W4245519624","https://openalex.org/W4210362738","https://openalex.org/W2082182038","https://openalex.org/W2003015231"],"abstract_inverted_index":{"The":[0,15,34,63],"3374":[1],"nucleotide":[2],"sequence":[3],"of":[4,29,49,70,84,97,106,129,149,160],"RNA2":[5,51,119],"from":[6],"the":[7,46,67,104,107,130,158,161],"British":[8],"PEBV":[9,74],"strain":[10],"SP5":[11],"has":[12],"been":[13],"determined.":[14],"RNA":[16],"includes":[17],"three":[18,108],"open":[19,35],"reading":[20,36],"frames":[21,37],"flanked":[22],"by":[23],"5'":[24],"and":[25,31,52,73],"3'":[26],"noncoding":[27],"regions":[28],"509":[30],"480":[32],"nucleotides.":[33],"specify":[38],"coat":[39,68,131],"protein,":[40],"a":[41,53,76,137],"29.6K":[42],"product":[43,48,55],"homologous":[44,57,90],"to":[45,58,91,122,157],"29.1K":[47],"TRV(TCM)":[50],"23K":[54],"not":[56],"any":[59],"previously":[60],"described":[61],"protein.":[62],"homology":[64],"demonstrated":[65],"between":[66],"proteins":[69],"PRV,":[71],"TRV":[72],"indicates":[75],"common":[77],"evolutionary":[78],"origin":[79],"for":[80,103],"these":[81,113,124],"proteins.":[82],"Upstream":[83],"each":[85],"ORF":[86,133],"are":[87],"located":[88],"sequences":[89,125],"those":[92],"with":[93,136],"which":[94],"subgenomic":[95,163],"RNAs":[96,102],"other":[98,150],"tobraviruses":[99],"start.":[100],"Subgenomic":[101],"expression":[105],"ORFs":[109],"may":[110,155],"start":[111],"at":[112],"points.":[114],"On":[115],"all":[116],"five":[117],"tobraviral":[118,151,162],"molecules":[120],"sequenced":[121],"date,":[123],"were":[126,146],"found":[127],"upstream":[128,148],"protein":[132],"in":[134],"association":[135],"strongly-conserved":[138],"potential":[139,144],"secondary":[140],"structural":[141],"element.":[142],"Similar":[143],"structures":[145,154],"identified":[147],"ORFs.":[152],"These":[153],"contribute":[156],"activity":[159],"promoter.":[164]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
