{"id":"https://openalex.org/W1969150682","doi":"https://doi.org/10.1007/11415770_13","title":"Consensus Folding of Unaligned RNA Sequences Revisited","display_name":"Consensus Folding of Unaligned RNA Sequences Revisited","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1969150682","doi":"https://doi.org/10.1007/11415770_13","mag":"1969150682"},"language":"en","primary_location":{"id":"doi:10.1007/11415770_13","doi":"https://doi.org/10.1007/11415770_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11415770_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"volume":{"id":"https://openalex.org/W4376539797","display_name":"Research in Computational Molecular Biology"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028801735","display_name":"Vineet Bafna","orcid":"https://orcid.org/0000-0002-5810-6241","observed_orcids":["https://orcid.org/0000-0002-5810-6241"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vineet Bafna","raw_affiliation_strings":["Dept. of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078007096","display_name":"Haixu Tang","orcid":"https://orcid.org/0000-0001-8963-8155","observed_orcids":["https://orcid.org/0000-0001-8963-8155"]},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haixu Tang","raw_affiliation_strings":["School of Informatics and Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, 47408, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, 47408, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100768909","display_name":"Shaojie Zhang","orcid":"https://orcid.org/0000-0002-4051-5549","observed_orcids":["https://orcid.org/0000-0002-4051-5549"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaojie Zhang","raw_affiliation_strings":["Dept. of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.3467,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.90857548,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"172","last_page":"187"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-secondary-structure-prediction","display_name":"RNA secondary structure prediction","score":0.8880000114440918},{"id":"https://openalex.org/keywords/thermodynamic-stability","display_name":"thermodynamic stability","score":0.9509999752044678},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"non-coding RNA","score":0.8550000190734863},{"id":"https://openalex.org/keywords/energy-minimization","display_name":"energy minimization","score":0.6380000114440918}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7505693435668945},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.48625171184539795},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.410387247800827},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3481080234050751},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3392487168312073},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15397554636001587},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12571954727172852},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0967155396938324},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1007/11415770_13","doi":"https://doi.org/10.1007/11415770_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11415770_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.130.9472","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.130.9472","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.ucsd.edu/~shzhang/app/JCB_2006_RNAscf.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.371.5473","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.371.5473","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cseweb.ucsd.edu/users/shzhang/app/RECOMB2005_RNAscf.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.423.3951","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.423.3951","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.ucf.edu/~shzhang/Combio/RNAscf.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.92.4609","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.92.4609","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.ucsd.edu/~vbafna/pub/rnascf4.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W165213868","https://openalex.org/W1513047926","https://openalex.org/W1542426682","https://openalex.org/W1543796220","https://openalex.org/W1556866576","https://openalex.org/W1574721051","https://openalex.org/W1981777358","https://openalex.org/W1987680287","https://openalex.org/W1995403172","https://openalex.org/W1998300401","https://openalex.org/W1998585544","https://openalex.org/W1998894153","https://openalex.org/W2000191287","https://openalex.org/W2009736453","https://openalex.org/W2011368877","https://openalex.org/W2012879790","https://openalex.org/W2017302704","https://openalex.org/W2018216725","https://openalex.org/W2025763720","https://openalex.org/W2044715197","https://openalex.org/W2051188149","https://openalex.org/W2054931730","https://openalex.org/W2061158331","https://openalex.org/W2065225159","https://openalex.org/W2073865971","https://openalex.org/W2095145214","https://openalex.org/W2095824228","https://openalex.org/W2103250001","https://openalex.org/W2106882534","https://openalex.org/W2114143204","https://openalex.org/W2116619380","https://openalex.org/W2127314967","https://openalex.org/W2136513153","https://openalex.org/W2137356209","https://openalex.org/W2137640371","https://openalex.org/W2139298143","https://openalex.org/W2140651796","https://openalex.org/W2141157874","https://openalex.org/W2143593381","https://openalex.org/W2157201140","https://openalex.org/W2158381555","https://openalex.org/W2158771361","https://openalex.org/W2170472690","https://openalex.org/W2485383890","https://openalex.org/W2612812586"],"related_works":["https://openalex.org/W1824702766","https://openalex.org/W1971346501","https://openalex.org/W2183625742","https://openalex.org/W3209002005","https://openalex.org/W1620090002","https://openalex.org/W7095312617","https://openalex.org/W1498596252","https://openalex.org/W2023140145","https://openalex.org/W2413886249","https://openalex.org/W2409994124"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2016-06-24T00:00:00"}