{"id":"https://openalex.org/W1968963151","doi":"https://doi.org/10.1371/journal.pntd.0001816","title":"Transcriptome Patterns from Primary Cutaneous Leishmania braziliensis Infections Associate with Eventual Development of Mucosal Disease in Humans","display_name":"Transcriptome Patterns from Primary Cutaneous Leishmania braziliensis Infections Associate with Eventual Development of Mucosal Disease in Humans","publication_year":2012,"publication_date":"2012-09-13","ids":{"openalex":"https://openalex.org/W1968963151","doi":"https://doi.org/10.1371/journal.pntd.0001816","mag":"1968963151","pmid":"https://pubmed.ncbi.nlm.nih.gov/23029578","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3441406"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pntd.0001816","doi":"https://doi.org/10.1371/journal.pntd.0001816","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pntd.0001816","pdf_url":"https://journals.plos.org/plosntds/article/file?id=10.1371/journal.pntd.0001816&type=printable","source":{"id":"https://openalex.org/S46544255","display_name":"PLoS neglected tropical diseases","issn_l":"1935-2727","issn":["1935-2727","1935-2735"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-2","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Neglected Tropical Diseases","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosntds/article/file?id=10.1371/journal.pntd.0001816&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058323688","display_name":"Ana Claudia Maretti-Mira","orcid":"https://orcid.org/0000-0002-6252-2811","observed_orcids":["https://orcid.org/0000-0002-6252-2811"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I177607063","display_name":"The Lundquist Institute","ror":"https://ror.org/025j2nd68","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I177607063"]},{"id":"https://openalex.org/I4210165985","display_name":"Harbor\u2013UCLA Medical Center","ror":"https://ror.org/05h4zj272","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1328359107","https://openalex.org/I4210165985"]},{"id":"https://openalex.org/I4405286966","display_name":"Instituto Oswaldo Cruz","ror":"https://ror.org/03pww0c55","country_code":"BR","type":"facility","lineage":["https://openalex.org/I4405286966","https://openalex.org/I52325"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Ana Claudia Maretti-Mira","raw_affiliation_strings":["Division of Molecular Medicine, Department of Medicine, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California, United States of America","Laborat\u00f3rio Interdisciplinar de Pesquisas M\u00e9dicas, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Molecular Medicine, Department of Medicine, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California, United States of America","institution_ids":["https://openalex.org/I161318765","https://openalex.org/I177607063","https://openalex.org/I4210165985"]},{"raw_affiliation_string":"Laborat\u00f3rio Interdisciplinar de Pesquisas M\u00e9dicas, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I4405286966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058555865","display_name":"Jaime Bittner","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I177607063","display_name":"The Lundquist Institute","ror":"https://ror.org/025j2nd68","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I177607063"]},{"id":"https://openalex.org/I4210165985","display_name":"Harbor\u2013UCLA Medical Center","ror":"https://ror.org/05h4zj272","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1328359107","https://openalex.org/I4210165985"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaime Bittner","raw_affiliation_strings":["Division of Molecular Medicine, Department of Medicine, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Molecular Medicine, Department of Medicine, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California, United States of America","institution_ids":["https://openalex.org/I161318765","https://openalex.org/I177607063","https://openalex.org/I4210165985"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113614752","display_name":"Manoel P. Oliveira-Neto","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Manoel Paes Oliveira-Neto","raw_affiliation_strings":["Ambulat\u00f3rio de Leishmanioses, Instituto de Pesquisas Cl\u00ednicas Evandro Chagas, Fiocruz, Rio de Janeiro, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ambulat\u00f3rio de Leishmanioses, Instituto de Pesquisas Cl\u00ednicas Evandro Chagas, Fiocruz, Rio de Janeiro, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011823859","display_name":"Minghsun Liu","orcid":"https://orcid.org/0009-0006-4732-1436","observed_orcids":["https://orcid.org/0009-0006-4732-1436"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210108215","display_name":"VA West Los Angeles Medical Center","ror":"https://ror.org/01xfgtq85","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210108215","https://openalex.org/I4210138663","https://openalex.org/I4210156876"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Minghsun Liu","raw_affiliation_strings":["David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Infectious Diseases Section (111 F) and Research Service, VA Medical Center West Los Angeles, Los Angeles, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Infectious Diseases Section (111 F) and Research Service, VA Medical Center West Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I4210108215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042125237","display_name":"Dezhi Kang","orcid":"https://orcid.org/0000-0002-0906-9456","observed_orcids":["https://orcid.org/0000-0002-0906-9456","https://orcid.org/0009-0006-1234-5059"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dezhi Kang","raw_affiliation_strings":["David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Department of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100603787","display_name":"Huiying Li","orcid":"https://orcid.org/0000-0001-5633-5270","observed_orcids":["https://orcid.org/0000-0001-5633-5270"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huiying Li","raw_affiliation_strings":["David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Department of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Molecular and Medical Pharmacology, Crump Institute for Molecular Imaging, UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066399831","display_name":"Claude Pirmez","orcid":"https://orcid.org/0000-0002-7443-0455","observed_orcids":["https://orcid.org/0000-0002-7443-0455"]},"institutions":[{"id":"https://openalex.org/I4405286966","display_name":"Instituto Oswaldo Cruz","ror":"https://ror.org/03pww0c55","country_code":"BR","type":"facility","lineage":["https://openalex.org/I4405286966","https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Claude Pirmez","raw_affiliation_strings":["Laborat\u00f3rio Interdisciplinar de Pesquisas M\u00e9dicas, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, Rio de Janeiro, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio Interdisciplinar de Pesquisas M\u00e9dicas, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I4405286966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037291322","display_name":"Noah A. Craft","orcid":"https://orcid.org/0009-0008-1515-3858","observed_orcids":["https://orcid.org/0009-0008-1515-3858"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I177607063","display_name":"The Lundquist Institute","ror":"https://ror.org/025j2nd68","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I177607063"]},{"id":"https://openalex.org/I4210165985","display_name":"Harbor\u2013UCLA Medical Center","ror":"https://ror.org/05h4zj272","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1328359107","https://openalex.org/I4210165985"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Noah Craft","raw_affiliation_strings":["David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Division of Molecular Medicine, Department of Medicine, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Division of Molecular Medicine, Department of Medicine, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California, United States of America","institution_ids":["https://openalex.org/I161318765","https://openalex.org/I177607063","https://openalex.org/I4210165985"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5037291322"],"corresponding_institution_ids":["https://openalex.org/I161318765","https://openalex.org/I177607063","https://openalex.org/I4210165985"],"apc_list":{"value":2670,"currency":"USD","value_usd":2670},"apc_paid":{"value":2670,"currency":"USD","value_usd":2670},"fwci":3.3945,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.91589016,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"6","issue":"9","first_page":"e1816","last_page":"e1816"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10823","display_name":"Research on Leishmaniasis Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10823","display_name":"Research on Leishmaniasis Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12107","display_name":"Leprosy Research and Treatment","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10890","display_name":"Trypanosoma species research and implications","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cutaneous-leishmaniasis","display_name":"cutaneous leishmaniasis","score":0.8930000066757202},{"id":"https://openalex.org/keywords/mucocutaneous-leishmaniasis","display_name":"mucocutaneous leishmaniasis","score":0.9900000095367432},{"id":"https://openalex.org/keywords/leishmania-braziliensis","display_name":"Leishmania braziliensis","score":0.9950000047683716},{"id":"https://openalex.org/keywords/transcriptome","display_name":"transcriptome","score":0.6610000133514404},{"id":"https://openalex.org/keywords/host-immune-response","display_name":"host immune response","score":0.6179999709129333},{"id":"https://openalex.org/keywords/antigen-presentation","display_name":"antigen presentation","score":0.9990000128746033},{"id":"https://openalex.org/keywords/disease-outcome-prediction","display_name":"disease outcome prediction","score":0.7490000128746033},{"id":"https://openalex.org/keywords/gene-expression-signatures","display_name":"gene expression signatures","score":0.47200000286102295},{"id":"https://openalex.org/keywords/american-cutaneous-leishmaniasis","display_name":"American tegumentary leishmaniasis","score":0.8500000238418579}],"concepts":[{"id":"https://openalex.org/C2778702967","wikidata":"https://www.wikidata.org/wiki/Q2590966","display_name":"Cutaneous leishmaniasis","level":3,"score":0.8398139476776123},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7389272451400757},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.6926685571670532},{"id":"https://openalex.org/C2776555147","wikidata":"https://www.wikidata.org/wiki/Q331283","display_name":"Leishmaniasis","level":2,"score":0.6840696930885315},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6655381321907043},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.6577790975570679},{"id":"https://openalex.org/C2781092759","wikidata":"https://www.wikidata.org/wiki/Q524818","display_name":"Leishmania","level":3,"score":0.649151086807251},{"id":"https://openalex.org/C2777735729","wikidata":"https://www.wikidata.org/wiki/Q2493699","display_name":"Leishmania braziliensis","level":4,"score":0.6306800246238708},{"id":"https://openalex.org/C136449434","wikidata":"https://www.wikidata.org/wiki/Q428253","display_name":"Innate immune system","level":3,"score":0.6120836734771729},{"id":"https://openalex.org/C193419808","wikidata":"https://www.wikidata.org/wiki/Q1645075","display_name":"Acquired immune system","level":3,"score":0.5677725672721863},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.519048273563385},{"id":"https://openalex.org/C2779341262","wikidata":"https://www.wikidata.org/wiki/Q182581","display_name":"Immunity","level":3,"score":0.47527211904525757},{"id":"https://openalex.org/C71928629","wikidata":"https://www.wikidata.org/wiki/Q804206","display_name":"Parasite hosting","level":2,"score":0.4053627848625183},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36511683464050293},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.27563536167144775},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18092066049575806},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1722562611103058},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14997336268424988},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000293","descriptor_name":"Adolescent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007892","descriptor_name":"Leishmania braziliensis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007892","descriptor_name":"Leishmania braziliensis","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":true},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016773","descriptor_name":"Leishmaniasis, Cutaneous","qualifier_ui":"Q000469","qualifier_name":"parasitology","is_major_topic":true},{"descriptor_ui":"D016773","descriptor_name":"Leishmaniasis, Cutaneous","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055815","descriptor_name":"Young Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":10,"locations":[{"id":"doi:10.1371/journal.pntd.0001816","doi":"https://doi.org/10.1371/journal.pntd.0001816","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pntd.0001816","pdf_url":"https://journals.plos.org/plosntds/article/file?id=10.1371/journal.pntd.0001816&type=printable","source":{"id":"https://openalex.org/S46544255","display_name":"PLoS neglected tropical diseases","issn_l":"1935-2727","issn":["1935-2727","1935-2735"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-2","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Neglected Tropical Diseases","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2452153","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3441406","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3441406","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3441406","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Negl Trop Dis","raw_type":"Text"},{"id":"pmid:23029578","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23029578","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS neglected tropical diseases","raw_type":"Comparative Study"},{"id":"pmh:oai:www.arca.fiocruz.br:icict/18853","doi":null,"is_oa":true,"landing_page_url":"https://www.arca.fiocruz.br/handle/icict/18853","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FIOCRUZ (ARCA)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.772.3124","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.772.3124","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/f5/b2/pntd.0001816.PMC3441406.pdf","raw_type":"text"},{"id":"pmh:oai:americanae.aecid.es:2327565","doi":null,"is_oa":true,"landing_page_url":"https://www.arca.fiocruz.br/handle/icict/18853","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da FIOCRUZ (ARCA)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:arca.fiocruz.br:icict/18853","doi":null,"is_oa":true,"landing_page_url":"https://arca.fiocruz.br/handle/icict/18853","pdf_url":null,"source":{"id":"https://openalex.org/S7407055450","display_name":"Arca - Reposit\u00f3rio Institucional da Fiocruz","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:13032550dbb74ea5ac4b9a9f0ed427e4","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/13032550dbb74ea5ac4b9a9f0ed427e4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Neglected Tropical Diseases, Vol 6, Iss 9, p e1816 (2012)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/119978","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/Transcriptome_Patterns_from_Primary_Cutaneous_Leishmania_braziliensis_Infections_Associate_with_Eventual_Development_of_Mucosal_Disease_in_Humans/119978","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pntd.0001816","doi":"https://doi.org/10.1371/journal.pntd.0001816","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pntd.0001816","pdf_url":"https://journals.plos.org/plosntds/article/file?id=10.1371/journal.pntd.0001816&type=printable","source":{"id":"https://openalex.org/S46544255","display_name":"PLoS neglected tropical diseases","issn_l":"1935-2727","issn":["1935-2727","1935-2735"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-2","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Neglected Tropical Diseases","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.9922999739646912,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"sustainable_development_goals_aurora":[{"score":0.5799999833106995,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323917","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1968963151.pdf","grobid_xml":"https://content.openalex.org/works/W1968963151.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1492708996","https://openalex.org/W1515941168","https://openalex.org/W1526737598","https://openalex.org/W1543858375","https://openalex.org/W1547893899","https://openalex.org/W1732889657","https://openalex.org/W1918304741","https://openalex.org/W1965667314","https://openalex.org/W1967585735","https://openalex.org/W1971104888","https://openalex.org/W1985517047","https://openalex.org/W1994241617","https://openalex.org/W2008486285","https://openalex.org/W2009554048","https://openalex.org/W2010516618","https://openalex.org/W2022698198","https://openalex.org/W2045107384","https://openalex.org/W2051838113","https://openalex.org/W2054200656","https://openalex.org/W2055311201","https://openalex.org/W2065578770","https://openalex.org/W2071231090","https://openalex.org/W2082029206","https://openalex.org/W2082871926","https://openalex.org/W2083838152","https://openalex.org/W2090961207","https://openalex.org/W2094225975","https://openalex.org/W2107915297","https://openalex.org/W2109363337","https://openalex.org/W2114829829","https://openalex.org/W2114830189","https://openalex.org/W2115323804","https://openalex.org/W2123420298","https://openalex.org/W2137839234","https://openalex.org/W2140299259","https://openalex.org/W2144905672","https://openalex.org/W2145609113","https://openalex.org/W2146965628","https://openalex.org/W2147933575","https://openalex.org/W2151797745","https://openalex.org/W2153254832","https://openalex.org/W2157795344","https://openalex.org/W2158116803","https://openalex.org/W2162763987","https://openalex.org/W2165250800","https://openalex.org/W2170302951","https://openalex.org/W2752987694","https://openalex.org/W4294107304"],"related_works":["https://openalex.org/W4408567705","https://openalex.org/W7160938105","https://openalex.org/W7042513207","https://openalex.org/W2082270851","https://openalex.org/W2519112974","https://openalex.org/W2891841468","https://openalex.org/W4288032600","https://openalex.org/W2082029206","https://openalex.org/W4380182403","https://openalex.org/W7169683894"],"abstract_inverted_index":{"INTRODUCTION:":[0],"Localized":[1],"Cutaneous":[2],"Leishmaniasis":[3,7,17],"(LCL)":[4],"and":[5,27,74,112,124,154,175,193,199],"Mucosal":[6],"(ML)":[8],"are":[9,38],"two":[10],"extreme":[11],"clinical":[12],"forms":[13],"of":[14,34,51,84,107,115,120,173,184,197],"American":[15],"Tegumentary":[16],"that":[18,30,63,139],"usually":[19],"begin":[20],"as":[21],"solitary":[22],"primary":[23,52,78,137,159],"cutaneous":[24,53,79,160],"lesions.":[25,80,162],"Host":[26],"parasite":[28],"factors":[29],"influence":[31],"the":[32,47,72,108,136,170,181],"progression":[33],"LCL":[35,101,174],"to":[36,61,87,96,149],"ML":[37,60,97,176],"not":[39],"completely":[40],"understood.":[41],"In":[42],"this":[43],"manuscript,":[44],"we":[45,69],"compare":[46],"gene":[48],"expression":[49],"profiles":[50],"lesions":[54,99,138],"from":[55,100],"patients":[56,102],"who":[57],"eventually":[58],"developed":[59],"those":[62],"did":[64],"not.":[65],"METHODS:":[66],"Using":[67],"RNA-seq,":[68],"analyzed":[70],"both":[71,152],"human":[73,93,153],"Leishmania":[75,88,155],"transcriptomes":[76],"in":[77,118,125,135,158,169],"RESULTS:":[81],"Limited":[82],"number":[83],"reads":[85],"mapping":[86],"transcripts":[89,157],"were":[90,147],"obtained.":[91],"For":[92],"transcripts,":[94],"compared":[95],"patients,":[98],"displayed":[103],"a":[104,131,189,194],"general":[105],"multi-polarization":[106],"adaptive":[109,200],"immune":[110,122,171],"response":[111,192],"showed":[113],"up-regulation":[114],"genes":[116],"involved":[117],"chemoattraction":[119],"innate":[121,198],"cells":[123],"antigen":[126],"presentation.":[127],"We":[128,146],"also":[129],"identified":[130],"potential":[132],"transcriptional":[133],"signature":[134],"may":[140],"predict":[141],"long-term":[142],"disease":[143],"outcome.":[144],"CONCLUSIONS:":[145],"able":[148],"simultaneously":[150],"sequence":[151],"mRNA":[156],"leishmaniasis":[161],"Our":[163],"results":[164],"suggest":[165],"an":[166],"intrinsic":[167],"difference":[168],"capacity":[172],"patients.":[177],"The":[178],"findings":[179],"correlate":[180],"complete":[182],"cure":[183],"L.":[185],"braziliensis":[186],"infection":[187],"with":[188],"controlled":[190],"inflammatory":[191],"balanced":[195],"activation":[196],"immunity.":[201]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
