{"id":"https://openalex.org/W1968329618","doi":"https://doi.org/10.1371/journal.pone.0049651","title":"Genetic Diversity and Transmission Characteristics of Beijing Family Strains of Mycobacterium tuberculosis in Peru","display_name":"Genetic Diversity and Transmission Characteristics of Beijing Family Strains of Mycobacterium tuberculosis in Peru","publication_year":2012,"publication_date":"2012-11-21","ids":{"openalex":"https://openalex.org/W1968329618","doi":"https://doi.org/10.1371/journal.pone.0049651","mag":"1968329618","pmid":"https://pubmed.ncbi.nlm.nih.gov/23185395","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3504116"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0049651","doi":"https://doi.org/10.1371/journal.pone.0049651","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0049651","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0049651&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0049651&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000652169","display_name":"Tomotada Iwamoto","orcid":"https://orcid.org/0000-0002-2650-0308","observed_orcids":["https://orcid.org/0000-0002-2650-0308"]},"institutions":[{"id":"https://openalex.org/I4405256536","display_name":"Kobe Institute of Health","ror":"https://ror.org/0495rze17","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4405256536"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Tomotada Iwamoto","raw_affiliation_strings":["Department of Microbiology, Kobe Institute of Health, Kobe, Japan. kx2t-iwmt@asahi-net.or.jp","Department of Microbiology, Kobe Institute of Health, Kobe, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Kobe Institute of Health, Kobe, Japan. kx2t-iwmt@asahi-net.or.jp","institution_ids":["https://openalex.org/I4405256536"]},{"raw_affiliation_string":"Department of Microbiology, Kobe Institute of Health, Kobe, Japan","institution_ids":["https://openalex.org/I4405256536"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042365397","display_name":"Louis Grandjean","orcid":"https://orcid.org/0000-0002-1457-8327","observed_orcids":["https://orcid.org/0000-0002-1457-8327"]},"institutions":[{"id":"https://openalex.org/I197097402","display_name":"Universidad Peruana Cayetano Heredia","ror":"https://ror.org/03yczjf25","country_code":"PE","type":"education","lineage":["https://openalex.org/I197097402"]},{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB","PE"],"is_corresponding":false,"raw_author_name":"Louis Grandjean","raw_affiliation_strings":["Clinical Research Department and TB Centre, London School of Hygiene and Tropical Medicine, London, United Kingdom","Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru","Wellcome Centre for Clinical Tropical Medicine, St. Mary\u2019s Campus, Imperial College, London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Research Department and TB Centre, London School of Hygiene and Tropical Medicine, London, United Kingdom","institution_ids":["https://openalex.org/I4210089966"]},{"raw_affiliation_string":"Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru","institution_ids":["https://openalex.org/I197097402"]},{"raw_affiliation_string":"Wellcome Centre for Clinical Tropical Medicine, St. Mary\u2019s Campus, Imperial College, London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kentaro Arikawa","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405256536","display_name":"Kobe Institute of Health","ror":"https://ror.org/0495rze17","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4405256536"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kentaro Arikawa","raw_affiliation_strings":["Department of Microbiology, Kobe Institute of Health, Kobe, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Kobe Institute of Health, Kobe, Japan","institution_ids":["https://openalex.org/I4405256536"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050791464","display_name":"Noriko Nakanishi","orcid":"https://orcid.org/0000-0002-3088-1254","observed_orcids":["https://orcid.org/0000-0002-3088-1254"]},"institutions":[{"id":"https://openalex.org/I4405256536","display_name":"Kobe Institute of Health","ror":"https://ror.org/0495rze17","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4405256536"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Noriko Nakanishi","raw_affiliation_strings":["Department of Microbiology, Kobe Institute of Health, Kobe, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Kobe Institute of Health, Kobe, Japan","institution_ids":["https://openalex.org/I4405256536"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083057163","display_name":"Luz Caviedes","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I197097402","display_name":"Universidad Peruana Cayetano Heredia","ror":"https://ror.org/03yczjf25","country_code":"PE","type":"education","lineage":["https://openalex.org/I197097402"]}],"countries":["PE"],"is_corresponding":false,"raw_author_name":"Luz Caviedes","raw_affiliation_strings":["Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru","institution_ids":["https://openalex.org/I197097402"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061944472","display_name":"Jorge Coronel","orcid":"https://orcid.org/0000-0002-4580-6716","observed_orcids":["https://orcid.org/0000-0002-4580-6716"]},"institutions":[{"id":"https://openalex.org/I197097402","display_name":"Universidad Peruana Cayetano Heredia","ror":"https://ror.org/03yczjf25","country_code":"PE","type":"education","lineage":["https://openalex.org/I197097402"]}],"countries":["PE"],"is_corresponding":false,"raw_author_name":"Jorge Coronel","raw_affiliation_strings":["Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru","institution_ids":["https://openalex.org/I197097402"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072410858","display_name":"Patricia Sheen","orcid":"https://orcid.org/0000-0002-7118-9301","observed_orcids":["https://orcid.org/0000-0002-7118-9301"]},"institutions":[{"id":"https://openalex.org/I197097402","display_name":"Universidad Peruana Cayetano Heredia","ror":"https://ror.org/03yczjf25","country_code":"PE","type":"education","lineage":["https://openalex.org/I197097402"]}],"countries":["PE"],"is_corresponding":false,"raw_author_name":"Patricia Sheen","raw_affiliation_strings":["Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru","institution_ids":["https://openalex.org/I197097402"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091634932","display_name":"Takayuki Wada","orcid":"https://orcid.org/0000-0002-7023-7455","observed_orcids":["https://orcid.org/0000-0002-7023-7455"]},"institutions":[{"id":"https://openalex.org/I4405286616","display_name":"Osaka Institute of Public Health","ror":"https://ror.org/02n55b658","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4405286616"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takayuki Wada","raw_affiliation_strings":["Department of Microbiology, Osaka City Institute of Public Health and Environmental Sciences, Osaka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Osaka City Institute of Public Health and Environmental Sciences, Osaka, Japan","institution_ids":["https://openalex.org/I4405286616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052932612","display_name":"Carmen A. Taype","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carmen A. Taype","raw_affiliation_strings":["Faculty of Biological Science, University of Leeds, Leeds, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Biological Science, University of Leeds, Leeds, United Kingdom","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112608569","display_name":"Marie\u2010Anne Shaw","orcid":"https://orcid.org/0009-0001-2084-5727","observed_orcids":["https://orcid.org/0009-0001-2084-5727","https://orcid.org/0000-0001-6718-5423"]},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Marie-Anne Shaw","raw_affiliation_strings":["Faculty of Biological Science, University of Leeds, Leeds, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Biological Science, University of Leeds, Leeds, United Kingdom","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060911998","display_name":"David Moore","orcid":"https://orcid.org/0000-0002-3748-0154","observed_orcids":["https://orcid.org/0000-0002-3748-0154","https://orcid.org/0000-0002-5151-9748"]},"institutions":[{"id":"https://openalex.org/I197097402","display_name":"Universidad Peruana Cayetano Heredia","ror":"https://ror.org/03yczjf25","country_code":"PE","type":"education","lineage":["https://openalex.org/I197097402"]},{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]}],"countries":["GB","PE"],"is_corresponding":false,"raw_author_name":"David A. J. Moore","raw_affiliation_strings":["Clinical Research Department and TB Centre, London School of Hygiene and Tropical Medicine, London, United Kingdom","Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Research Department and TB Centre, London School of Hygiene and Tropical Medicine, London, United Kingdom","institution_ids":["https://openalex.org/I4210089966"]},{"raw_affiliation_string":"Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru","institution_ids":["https://openalex.org/I197097402"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040912618","display_name":"Robert H. Gilman","orcid":"https://orcid.org/0000-0002-9037-0712","observed_orcids":["https://orcid.org/0000-0002-9037-0712"]},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I197097402","display_name":"Universidad Peruana Cayetano Heredia","ror":"https://ror.org/03yczjf25","country_code":"PE","type":"education","lineage":["https://openalex.org/I197097402"]}],"countries":["PE","US"],"is_corresponding":false,"raw_author_name":"Robert H. Gilman","raw_affiliation_strings":["Department of International Health, Johns Hopkins University, Bloomberg School of Public Health, Baltimore, Maryland, United States of America","Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of International Health, Johns Hopkins University, Bloomberg School of Public Health, Baltimore, Maryland, United States of America","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Laboratorio de Investigaci\u00f3n de Enfermedades Infecciosas, Universidad Peruana Cayetano Heredia, Lima, Peru","institution_ids":["https://openalex.org/I197097402"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5000652169"],"corresponding_institution_ids":["https://openalex.org/I4405256536"],"apc_list":{"value":2382,"currency":"USD","value_usd":2382},"apc_paid":{"value":2382,"currency":"USD","value_usd":2382},"fwci":7.8101,"has_fulltext":true,"cited_by_count":92,"citation_normalized_percentile":{"value":0.98051848,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"7","issue":"11","first_page":"e49651","last_page":"e49651"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11381","display_name":"Infectious Diseases and Tuberculosis","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.9179999828338623},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.8100000023841858},{"id":"https://openalex.org/keywords/transmission-characteristics","display_name":"transmission characteristics","score":0.6769999861717224},{"id":"https://openalex.org/keywords/spoligotyping","display_name":"spoligotyping","score":0.7260000109672546},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphisms","display_name":"single nucleotide polymorphisms","score":0.8349999785423279},{"id":"https://openalex.org/keywords/vntr-typing","display_name":"VNTR typing","score":0.7760000228881836},{"id":"https://openalex.org/keywords/endemic-clones","display_name":"endemic clones","score":0.5720000267028809},{"id":"https://openalex.org/keywords/lima","display_name":"Lima","score":0.875},{"id":"https://openalex.org/keywords/peru","display_name":"Peru","score":0.42800000309944153},{"id":"https://openalex.org/keywords/east-asia","display_name":"East Asia","score":0.5920000076293945}],"concepts":[{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.7438502311706543},{"id":"https://openalex.org/C2778304055","wikidata":"https://www.wikidata.org/wiki/Q657474","display_name":"Beijing","level":3,"score":0.7004217505455017},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.6879631876945496},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.6190212965011597},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.5395819544792175},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48466163873672485},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.4774494767189026},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.37487608194351196},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33929339051246643},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.25959938764572144},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.19865289330482483},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.19692257046699524},{"id":"https://openalex.org/C191935318","wikidata":"https://www.wikidata.org/wiki/Q148","display_name":"China","level":2,"score":0.1559690535068512},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.09788933396339417},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.052060216665267944},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000368","descriptor_name":"Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002681","descriptor_name":"China","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010568","descriptor_name":"Peru","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015995","descriptor_name":"Prevalence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058872","descriptor_name":"Epidemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":12,"locations":[{"id":"doi:10.1371/journal.pone.0049651","doi":"https://doi.org/10.1371/journal.pone.0049651","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0049651","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0049651&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2502793","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3504116","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:23185395","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23185395","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3504116","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3504116/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmh:oai:researchonline.lshtm.ac.uk:1593736","doi":null,"is_oa":false,"landing_page_url":"https://researchonline.lshtm.ac.uk/view/creators/icrudmor.html>;","pdf_url":null,"source":{"id":"https://openalex.org/S4306402527","display_name":"LSHTM Research Online (London School of Hygiene and Tropical Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210089966","host_organization_name":"London School of Hygiene & Tropical Medicine","host_organization_lineage":["https://openalex.org/I4210089966"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.802.6055","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.802.6055","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/bf/6a/pone.0049651.PMC3504116.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:6619d291c7fe4821bc3b6b6c86b60401","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/6619d291c7fe4821bc3b6b6c86b60401","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 7, Iss 11, p e49651 (2012)","raw_type":"article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10176772","doi":null,"is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10176772/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS ONE , 7 (11) , Article e49651. (2012)","raw_type":"Article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1484474","doi":null,"is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1484474/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS ONE , 7 (11) (2012)","raw_type":"Article"},{"id":"pmh:oai:figshare.com:article/116822","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Genetic_Diversity_and_Transmission_Characteristics_of_Beijing_Family_Strains_of_Mycobacterium_tuberculosis_in_Peru__/116822","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.60692/hkrp2-vdb60","doi":"https://doi.org/10.60692/hkrp2-vdb60","is_oa":true,"landing_page_url":"https://doi.org/10.60692/hkrp2-vdb60","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.60692/td2k2-t7674","doi":"https://doi.org/10.60692/td2k2-t7674","is_oa":true,"landing_page_url":"https://doi.org/10.60692/td2k2-t7674","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0049651","doi":"https://doi.org/10.1371/journal.pone.0049651","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0049651","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0049651&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8560000061988831}],"study_designs":[],"awards":[{"id":"https://openalex.org/G2088120230","display_name":"Can we get new insights into epidemiology of tuberculosis through whole genome sequencing analysis ?","funder_award_id":"24590845","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2172969756","display_name":null,"funder_award_id":"WT088559MA","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G3531341485","display_name":"Community randomised evaluation of socioeconomic intervention to prevent TB","funder_award_id":"MR/K007467/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G3587545757","display_name":"\u9ad8\u901f\u65cb\u5149\u6e2c\u5b9a\u88c5\u7f6e\u306b\u3088\u308b\u30ed\u30c9\u30d7\u30b7\u30f3\u306e\u69cb\u9020\u5909\u5316\u306e\u52d5\u7684\u7814\u7a76","funder_award_id":"078067","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4187727168","display_name":null,"funder_award_id":"H24-SHINKO-IPPAN-011","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G5280095593","display_name":null,"funder_award_id":"24590845","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G5819153056","display_name":"Optimizing the translation of MODS into policy and practice to maximize utility and impact","funder_award_id":"078067","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7176838032","display_name":"Fogarty International Clinical Research Scholars Support Center @ Vanderbilt-AAMC","funder_award_id":"R24TW007988","funder_id":"https://openalex.org/F4320337356","funder_display_name":"Fogarty International Center"},{"id":"https://openalex.org/G7493122126","display_name":"Novel techniques for the detection of Pediatric TB  in Ethiopia","funder_award_id":"R01HD059005","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G7990293326","display_name":"Global Disease Research Training Program in Peru","funder_award_id":"D43TW006581","funder_id":"https://openalex.org/F4320337356","funder_display_name":"Fogarty International Center"},{"id":"https://openalex.org/G9000315650","display_name":null,"funder_award_id":"078067/Z/05","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320310088","display_name":"Institute for Fermentation, Osaka","ror":"https://ror.org/05nq89q24"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320321945","display_name":"Ministry of Health, Labour and Welfare","ror":"https://ror.org/03mwa7s65"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320337356","display_name":"Fogarty International Center","ror":"https://ror.org/02xey9a22"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1968329618.pdf","grobid_xml":"https://content.openalex.org/works/W1968329618.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W21325562","https://openalex.org/W119107958","https://openalex.org/W1973500606","https://openalex.org/W1975681435","https://openalex.org/W1982549596","https://openalex.org/W1989652820","https://openalex.org/W1990782060","https://openalex.org/W1996163136","https://openalex.org/W2004078732","https://openalex.org/W2005203688","https://openalex.org/W2014732976","https://openalex.org/W2022061662","https://openalex.org/W2025486248","https://openalex.org/W2028456844","https://openalex.org/W2030916741","https://openalex.org/W2039368794","https://openalex.org/W2039758230","https://openalex.org/W2045059426","https://openalex.org/W2053177955","https://openalex.org/W2061133147","https://openalex.org/W2061795401","https://openalex.org/W2062967496","https://openalex.org/W2066086624","https://openalex.org/W2068026661","https://openalex.org/W2072113124","https://openalex.org/W2091594237","https://openalex.org/W2096741711","https://openalex.org/W2098618245","https://openalex.org/W2099080807","https://openalex.org/W2103435970","https://openalex.org/W2105089603","https://openalex.org/W2105351523","https://openalex.org/W2107073591","https://openalex.org/W2115317782","https://openalex.org/W2117034387","https://openalex.org/W2118894325","https://openalex.org/W2123253728","https://openalex.org/W2123694222","https://openalex.org/W2126144989","https://openalex.org/W2126568957","https://openalex.org/W2130462614","https://openalex.org/W2133119080","https://openalex.org/W2134558351","https://openalex.org/W2140500337","https://openalex.org/W2141814438","https://openalex.org/W2143351205","https://openalex.org/W2145282362","https://openalex.org/W2147470410","https://openalex.org/W2148453601","https://openalex.org/W2152777705","https://openalex.org/W2155566055","https://openalex.org/W2158023121","https://openalex.org/W2158818221","https://openalex.org/W2159888518","https://openalex.org/W2160696324","https://openalex.org/W2164198835","https://openalex.org/W2165822919","https://openalex.org/W2166318808","https://openalex.org/W2167472189","https://openalex.org/W2168326617","https://openalex.org/W2169018379","https://openalex.org/W2169602677","https://openalex.org/W2171622326","https://openalex.org/W4254998763"],"related_works":["https://openalex.org/W7097401911","https://openalex.org/W2200644774","https://openalex.org/W2035145890","https://openalex.org/W2053177955","https://openalex.org/W7095769079","https://openalex.org/W2025486248","https://openalex.org/W2078760984","https://openalex.org/W1989055548","https://openalex.org/W1982549596","https://openalex.org/W2012422780"],"abstract_inverted_index":{"Beijing":[0,35,53,61,125,130,151,185,242],"family":[1,36,62,131,152,243],"strains":[2,37,54,63,84,186,190,244],"of":[3,11,51,59,92,95,115,173,184,209,241,259],"Mycobacterium":[4],"tuberculosis":[5,69],"have":[6],"attracted":[7],"worldwide":[8],"attention":[9],"because":[10],"their":[12],"wide":[13],"geographical":[14],"distribution":[15],"and":[16,48,78,136,226,238],"global":[17],"emergence.":[18],"Peru,":[19,74],"which":[20,178],"has":[21],"a":[22,32,147,170,181,221,227,273],"historical":[23],"relationship":[24],"with":[25,263],"East":[26,266],"Asia,":[27],"is":[28],"considered":[29],"to":[30,43,104,145,180,192,255],"be":[31],"hotspot":[33],"for":[34,124,207,257],"in":[38,55,72,138,143,159,245,277,287],"South":[39],"America.":[40],"We":[41],"aimed":[42],"unveil":[44],"the":[45,52,90,154,193,203,210,236,246,260,269,283],"genetic":[46],"diversity":[47],"transmission":[49,230,240],"characteristics":[50],"Peru.":[56,160,278],"A":[57,279],"total":[58],"200":[60],"were":[64,85,101,140],"identified":[65],"from":[66,265],"2140":[67],"M.":[68],"isolates":[70],"obtained":[71],"Lima,":[73,139],"between":[75,134],"December":[76],"2008":[77],"January":[79],"2010.":[80],"Of":[81],"them,":[82],"198":[83],"classified":[86],"into":[87],"sublineages,":[88],"on":[89],"basis":[91],"10":[93,176],"sets":[94],"single":[96],"nucleotide":[97],"polymorphisms":[98],"(SNPs).":[99],"They":[100],"also":[102,141],"subjected":[103],"variable":[105],"number":[106],"tandem-repeat":[107],"(VNTR)":[108],"typing":[109],"using":[110],"an":[111],"international":[112],"standard":[113],"set":[114],"15":[116],"loci":[117,122,212,218],"(15-MIRU-VNTR)":[118],"plus":[119],"9":[120],"additional":[121,128],"optimized":[123],"strains.":[126,261],"An":[127],"70":[129],"strains,":[132],"isolated":[133],"1999":[135],"2006":[137],"analyzed":[142],"order":[144],"make":[146],"longitudinal":[148,280],"comparison.":[149],"The":[150,216],"was":[153,167,214,253,285],"third":[155],"largest":[156],"spoligotyping":[157],"clade":[158],"Its":[161],"population":[162],"structure,":[163],"by":[164,169,289],"SNP":[165],"typing,":[166],"characterized":[168],"high":[171,222,228],"frequency":[172],"Sequence":[174],"Type":[175],"(ST10),":[177],"belongs":[179],"modern":[182],"subfamily":[183,195],"(178/198,":[187],"89.9%).":[188],"Twelve":[189],"belonged":[191],"ancient":[194],"(ST3":[196],"[n=3],":[197],"ST25":[198],"[n=1],":[199],"ST19":[200],"[n=8]).":[201],"Overall,":[202],"polymorphic":[204],"information":[205],"content":[206],"each":[208],"24":[211,217],"values":[213],"low.":[215],"VNTR":[219,251],"showed":[220],"clustering":[223],"rate":[224],"(80.3%)":[225],"recent":[229],"index":[231],"(RTI(n-1)=0.707).":[232],"These":[233],"strongly":[234],"suggest":[235],"active":[237],"on-going":[239],"survey":[247],"area.":[248],"Notably,":[249],"1":[250],"genotype":[252,270,284],"found":[254],"account":[256],"43.9%":[258],"Comparisons":[262],"data":[264],"Asia":[267],"suggested":[268],"emerged":[271],"as":[272],"uniquely":[274],"endemic":[275],"clone":[276],"comparison":[281],"revealed":[282],"present":[286],"Lima":[288],"1999.":[290]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":17},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":6}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}
