{"id":"https://openalex.org/W1968096801","doi":"https://doi.org/10.1111/j.1472-4669.2005.00045.x","title":"A thermodynamic assessment of energy requirements for biomass synthesis by chemolithoautotrophic micro\u2010organisms in oxic and anoxic environments","display_name":"A thermodynamic assessment of energy requirements for biomass synthesis by chemolithoautotrophic micro\u2010organisms in oxic and anoxic environments","publication_year":2005,"publication_date":"2005-04-01","ids":{"openalex":"https://openalex.org/W1968096801","doi":"https://doi.org/10.1111/j.1472-4669.2005.00045.x","mag":"1968096801"},"language":"en","primary_location":{"id":"doi:10.1111/j.1472-4669.2005.00045.x","doi":"https://doi.org/10.1111/j.1472-4669.2005.00045.x","is_oa":false,"landing_page_url":"https://doi.org/10.1111/j.1472-4669.2005.00045.x","pdf_url":null,"source":{"id":"https://openalex.org/S41078117","display_name":"Geobiology","issn_l":"1472-4669","issn":["1472-4669","1472-4677"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Geobiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086168773","display_name":"T. M. McCollom","orcid":"https://orcid.org/0000-0002-3596-5588","observed_orcids":["https://orcid.org/0000-0002-3596-5588"]},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I4210114008","display_name":"Laboratory for Atmospheric and Space Physics","ror":"https://ror.org/01fcjzv38","country_code":"US","type":"facility","lineage":["https://openalex.org/I188538660","https://openalex.org/I4210114008"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T. M. MCCOLLOM","raw_affiliation_strings":["Center for Astrobiology and Laboratory for Atmospheric and Space Physics, Campus Box 392, University of Colorado, Boulder, CO 80309-0392, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Astrobiology and Laboratory for Atmospheric and Space Physics, Campus Box 392, University of Colorado, Boulder, CO 80309-0392, USA","institution_ids":["https://openalex.org/I188538660","https://openalex.org/I4210114008"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047107252","display_name":"Jan P. Amend","orcid":"https://orcid.org/0000-0003-4953-7776","observed_orcids":["https://orcid.org/0000-0003-4953-7776"]},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. P. AMEND","raw_affiliation_strings":["Department of Earth and Planetary Sciences, Campus Box 1169, Washington University, St. Louis, MO 63130, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Earth and Planetary Sciences, Campus Box 1169, Washington University, St. Louis, MO 63130, USA","institution_ids":["https://openalex.org/I204465549"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5086168773"],"corresponding_institution_ids":["https://openalex.org/I188538660","https://openalex.org/I4210114008"],"apc_list":{"value":4880,"currency":"USD","value_usd":4880},"apc_paid":null,"fwci":1.9545,"has_fulltext":false,"cited_by_count":142,"citation_normalized_percentile":{"value":0.83857931,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"3","issue":"2","first_page":"135","last_page":"144"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.3240000009536743,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.3240000009536743,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12688","display_name":"Microbial metabolism and enzyme function","score":0.2766000032424927,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.1526000052690506,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomass-synthesis","display_name":"biomass synthesis","score":0.7649999856948853},{"id":"https://openalex.org/keywords/energy-flow","display_name":"energy flow","score":0.5479999780654907},{"id":"https://openalex.org/keywords/oxic-and-anoxic-conditions","display_name":"oxic and anoxic conditions","score":0.7440000176429749},{"id":"https://openalex.org/keywords/submarine-hydrothermal-systems","display_name":"submarine hydrothermal systems","score":0.7110000252723694},{"id":"https://openalex.org/keywords/microbial-productivity","display_name":"microbial productivity","score":0.6639999747276306},{"id":"https://openalex.org/keywords/geothermal-environments","display_name":"geothermal environments","score":0.4830000102519989}],"concepts":[{"id":"https://openalex.org/C108970007","wikidata":"https://www.wikidata.org/wiki/Q568324","display_name":"Anoxic waters","level":2,"score":0.782732367515564},{"id":"https://openalex.org/C115540264","wikidata":"https://www.wikidata.org/wiki/Q2945560","display_name":"Biomass (ecology)","level":2,"score":0.7671383619308472},{"id":"https://openalex.org/C48743137","wikidata":"https://www.wikidata.org/wiki/Q1783121","display_name":"Organic matter","level":2,"score":0.6117353439331055},{"id":"https://openalex.org/C104647666","wikidata":"https://www.wikidata.org/wiki/Q131427","display_name":"Autotroph","level":3,"score":0.5360180735588074},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.5292966365814209},{"id":"https://openalex.org/C22547674","wikidata":"https://www.wikidata.org/wiki/Q582668","display_name":"Chemical energy","level":2,"score":0.5156022906303406},{"id":"https://openalex.org/C2982719155","wikidata":"https://www.wikidata.org/wiki/Q25584060","display_name":"Energy source","level":3,"score":0.4971490204334259},{"id":"https://openalex.org/C206815995","wikidata":"https://www.wikidata.org/wiki/Q1341307","display_name":"Energy flow","level":3,"score":0.4640933871269226},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.42823317646980286},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.4261879622936249},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.4258388578891754},{"id":"https://openalex.org/C107872376","wikidata":"https://www.wikidata.org/wiki/Q321355","display_name":"Environmental chemistry","level":1,"score":0.3505236506462097},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30674439668655396},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2677726745605469},{"id":"https://openalex.org/C188573790","wikidata":"https://www.wikidata.org/wiki/Q12705","display_name":"Renewable energy","level":2,"score":0.15619322657585144},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.11936980485916138},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1111/j.1472-4669.2005.00045.x","doi":"https://doi.org/10.1111/j.1472-4669.2005.00045.x","is_oa":false,"landing_page_url":"https://doi.org/10.1111/j.1472-4669.2005.00045.x","pdf_url":null,"source":{"id":"https://openalex.org/S41078117","display_name":"Geobiology","issn_l":"1472-4669","issn":["1472-4669","1472-4677"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Geobiology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.9853000044822693},{"display_name":"Climate action","id":"https://metadata.un.org/sdg/13","score":0.4399999976158142}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W1518260195","https://openalex.org/W1756209275","https://openalex.org/W1971568243","https://openalex.org/W1973847153","https://openalex.org/W1979532470","https://openalex.org/W1996403553","https://openalex.org/W1998052861","https://openalex.org/W2001851922","https://openalex.org/W2003599909","https://openalex.org/W2003785769","https://openalex.org/W2014365296","https://openalex.org/W2020021522","https://openalex.org/W2026717095","https://openalex.org/W2028639205","https://openalex.org/W2034324611","https://openalex.org/W2039172699","https://openalex.org/W2039368209","https://openalex.org/W2053901151","https://openalex.org/W2054923035","https://openalex.org/W2066527077","https://openalex.org/W2066726607","https://openalex.org/W2075494902","https://openalex.org/W2076935944","https://openalex.org/W2083731556","https://openalex.org/W2084725505","https://openalex.org/W2092228908","https://openalex.org/W2101587950","https://openalex.org/W2105845193","https://openalex.org/W2109545282","https://openalex.org/W2111473359","https://openalex.org/W2112951169","https://openalex.org/W2113093635","https://openalex.org/W2118001436","https://openalex.org/W2120724509","https://openalex.org/W2133806567","https://openalex.org/W2145368775","https://openalex.org/W2156470920","https://openalex.org/W2165102628","https://openalex.org/W2165966788","https://openalex.org/W2166924822","https://openalex.org/W2233755655","https://openalex.org/W2309383508","https://openalex.org/W2326380944","https://openalex.org/W3166999166","https://openalex.org/W4214892965","https://openalex.org/W4239172895"],"related_works":["https://openalex.org/W2193436569","https://openalex.org/W36585398","https://openalex.org/W3084360333","https://openalex.org/W2095398207","https://openalex.org/W2881879485","https://openalex.org/W7000158152","https://openalex.org/W2172992385","https://openalex.org/W2272275473","https://openalex.org/W7128911789","https://openalex.org/W7095673679"],"abstract_inverted_index":{"ABSTRACT":[0],"The":[1,169],"flow":[2,99,134],"of":[3,27,44,63,72,90,97,108,132,146,155,178],"metabolic":[4],"energy":[5,64,74,98,133,148,162,181,206,229,246],"is":[6,187,250],"arguably":[7],"the":[8,45,60,67,70,84,91,104,114,144,152,160,179,194,211,245],"most":[9,43],"fundamental":[10],"property":[11],"governing":[12],"ecosystem":[13],"structure.":[14],"In":[15,53,123,192],"many":[16],"microbial":[17],"communities,":[18,137],"particularly":[19],"those":[20],"that":[21,172],"inhabit":[22],"environments":[23],"with":[24],"little":[25],"input":[26,65,230],"exogenous":[28],"organic":[29,46],"matter":[30,47],"such":[31,136],"as":[32],"submarine":[33],"hydrothermal":[34],"systems":[35],"and":[36,69,87,111,120,157,166,238],"deep":[37],"subsurface":[38,121],"environments,":[39,55],"chemolithoautotrophic":[40,109],"organisms":[41,198,221,233],"generate":[42],"available":[48],"to":[49,66,75,116,142,150,158,209,223],"support":[50],"heterotrophic":[51],"growth.":[52],"these":[54],"inorganic":[56],"chemical":[57,73],"reactions":[58],"constitute":[59],"main":[61],"source":[62],"system,":[68],"conversion":[71],"biomass":[76,156,226],"by":[77,185],"chemolithoautotrophs":[78,186],"exerts":[79],"a":[80,124,128],"prominent":[81],"control":[82],"on":[83],"size,":[85],"composition,":[86],"trophic":[88],"structure":[89],"biological":[92,106],"community.":[93],"A":[94],"rigorous":[95],"accounting":[96,131],"would":[100],"aid":[101],"in":[102,118,135,234],"understanding":[103],"potential":[105],"productivity":[107],"communities":[110],"help":[112,217],"clarify":[113],"limits":[115],"habitability":[117],"geothermal":[119],"environments.":[122],"step":[125],"towards":[126],"achieving":[127],"more":[129,205],"complete":[130],"we":[138],"present":[139],"here":[140],"computations":[141],"quantify":[143],"amount":[145],"thermodynamic":[147],"required":[149],"synthesize":[151,210],"molecular":[153],"components":[154],"compare":[159],"relative":[161],"requirements":[163],"under":[164],"oxic":[165],"anoxic":[167],"conditions.":[168],"results":[170,195],"suggest":[171],"only":[173],"about":[174],"10%":[175],"or":[176],"less":[177],"overall":[180],"consumed":[182],"during":[183],"growth":[184,236],"transformed":[188],"directly":[189],"into":[190],"biomass.":[191,213],"addition,":[193],"indicate":[196],"aerobic":[197,232],"require":[199],"approximately":[200],"17":[201],"kJ":[202],"(g":[203],"cells)\u22121":[204],"than":[207,231],"anaerobes":[208],"same":[212],"This":[214],"advantage":[215],"may":[216],"explain":[218],"why":[219,239],"anaerobic":[220,240],"appear":[222],"yield":[224,247],"greater":[225],"per":[227],"unit":[228],"laboratory":[235],"studies,":[237],"micro\u2010organisms":[241],"can":[242],"exist":[243],"where":[244],"from":[248],"catabolism":[249],"extremely":[251],"low.":[252]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":8}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}