{"id":"https://openalex.org/W1968043802","doi":"https://doi.org/10.1104/pp.94.2.671","title":"Effects of trans-Cinnamic Acid on Expression of the Bean Phenylalanine Ammonia-Lyase Gene Family","display_name":"Effects of trans-Cinnamic Acid on Expression of the Bean Phenylalanine Ammonia-Lyase Gene Family","publication_year":1990,"publication_date":"1990-10-01","ids":{"openalex":"https://openalex.org/W1968043802","doi":"https://doi.org/10.1104/pp.94.2.671","mag":"1968043802","pmid":"https://pubmed.ncbi.nlm.nih.gov/16667764","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/1077284"},"language":"en","primary_location":{"id":"doi:10.1104/pp.94.2.671","doi":"https://doi.org/10.1104/pp.94.2.671","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.94.2.671","pdf_url":"https://academic.oup.com/plphys/article-pdf/94/2/671/35641976/plphys_v94_2_671.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/plphys/article-pdf/94/2/671/35641976/plphys_v94_2_671.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056233400","display_name":"Mehrdad Mavandad","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehrdad Mavandad","raw_affiliation_strings":["Plant Biology Division, The Samuel Roberts Noble Foundation, P.O. Box 2180, Ardmore, Oklahoma 73402"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, P.O. Box 2180, Ardmore, Oklahoma 73402","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006389025","display_name":"Robert Edwards","orcid":"https://orcid.org/0000-0003-0809-5991","observed_orcids":["https://orcid.org/0000-0003-0809-5991"]},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Edwards","raw_affiliation_strings":["Plant Biology Division , The Samuel Roberts Noble Foundation , P.O. Box 2180 , Ardmore , Oklahoma 73402"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Biology Division , The Samuel Roberts Noble Foundation , P.O. Box 2180 , Ardmore , Oklahoma 73402","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020265268","display_name":"Xiaouw Liang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaouw Liang","raw_affiliation_strings":["Plant Biology Division , The Samuel Roberts Noble Foundation , P.O. Box 2180 , Ardmore , Oklahoma 73402"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Biology Division , The Samuel Roberts Noble Foundation , P.O. Box 2180 , Ardmore , Oklahoma 73402","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023829693","display_name":"Christopher John Lamb","orcid":"https://orcid.org/0000-0002-2443-0596","observed_orcids":["https://orcid.org/0000-0002-2443-0596"]},"institutions":[{"id":"https://openalex.org/I1307098950","display_name":"Salk Institute for Biological Studies","ror":"https://ror.org/03xez1567","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1307098950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Lamb","raw_affiliation_strings":["); Plant Biology Laboratory , The Salk Institute for Biological Studies , La Jolla , California 92037 (X.L. , C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"); Plant Biology Laboratory , The Salk Institute for Biological Studies , La Jolla , California 92037 (X.L. , C","institution_ids":["https://openalex.org/I1307098950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047292984","display_name":"Richard Arthur Dixon","orcid":"https://orcid.org/0000-0001-8393-9408","observed_orcids":["https://orcid.org/0000-0001-8393-9408"]},"institutions":[{"id":"https://openalex.org/I1307098950","display_name":"Salk Institute for Biological Studies","ror":"https://ror.org/03xez1567","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1307098950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard A. Dixon","raw_affiliation_strings":["); Plant Biology Laboratory , The Salk Institute for Biological Studies , La Jolla , California 92037 (X.L. , C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"); Plant Biology Laboratory , The Salk Institute for Biological Studies , La Jolla , California 92037 (X.L. , C","institution_ids":["https://openalex.org/I1307098950"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3851,"currency":"USD","value_usd":3851},"apc_paid":null,"fwci":2.2859,"has_fulltext":true,"cited_by_count":97,"citation_normalized_percentile":{"value":0.88423613,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"94","issue":"2","first_page":"671","last_page":"680"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.7865999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.7865999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.1160999983549118,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.01080000028014183,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trans-cinnamic-acid","display_name":"trans-cinnamic acid","score":0.996999979019165},{"id":"https://openalex.org/keywords/phenylalanine-ammonia-lyase","display_name":"phenylalanine ammonia-lyase","score":0.9629999995231628},{"id":"https://openalex.org/keywords/pal-gene-family","display_name":"PAL gene family","score":0.8489999771118164},{"id":"https://openalex.org/keywords/common-bean","display_name":"Phaseolus vulgaris","score":0.984000027179718},{"id":"https://openalex.org/keywords/fungal-elicitors","display_name":"fungal elicitors","score":0.8450000286102295},{"id":"https://openalex.org/keywords/elicitor-induced-gene-expression","display_name":"elicitor-induced gene expression","score":0.7269999980926514},{"id":"https://openalex.org/keywords/phenylpropanoid-biosynthesis","display_name":"phenylpropanoid biosynthesis","score":0.7440000176429749},{"id":"https://openalex.org/keywords/feedback-regulation","display_name":"feedback regulation","score":0.6819999814033508},{"id":"https://openalex.org/keywords/pal1","display_name":"PAL1","score":0.6079999804496765},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"transcriptional regulation","score":0.5989999771118164}],"concepts":[{"id":"https://openalex.org/C2779012821","wikidata":"https://www.wikidata.org/wiki/Q1329233","display_name":"Elicitor","level":3,"score":0.9866893291473389},{"id":"https://openalex.org/C2778112864","wikidata":"https://www.wikidata.org/wiki/Q413910","display_name":"Phenylalanine ammonia-lyase","level":4,"score":0.9468719959259033},{"id":"https://openalex.org/C2776286235","wikidata":"https://www.wikidata.org/wiki/Q310438","display_name":"Phaseolus","level":2,"score":0.8424975275993347},{"id":"https://openalex.org/C2777431362","wikidata":"https://www.wikidata.org/wiki/Q170545","display_name":"Phenylalanine","level":3,"score":0.6474736928939819},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5510462522506714},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.4895209074020386},{"id":"https://openalex.org/C2778831176","wikidata":"https://www.wikidata.org/wiki/Q164785","display_name":"Cinnamic acid","level":2,"score":0.4869571626186371},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.4520374536514282},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4361540973186493},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41047078371047974},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.16131648421287537},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.09610259532928467}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1104/pp.94.2.671","doi":"https://doi.org/10.1104/pp.94.2.671","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.94.2.671","pdf_url":"https://academic.oup.com/plphys/article-pdf/94/2/671/35641976/plphys_v94_2_671.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1077284","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1077284","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC1077284/pdf/plntphys00811-0289.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiol","raw_type":"Text"},{"id":"pmid:16667764","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16667764","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant physiology","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1104/pp.94.2.671","doi":"https://doi.org/10.1104/pp.94.2.671","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.94.2.671","pdf_url":"https://academic.oup.com/plphys/article-pdf/94/2/671/35641976/plphys_v94_2_671.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310638","display_name":"McGill University","ror":"https://ror.org/01pxwe438"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1968043802.pdf","grobid_xml":"https://content.openalex.org/works/W1968043802.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W193921617","https://openalex.org/W1525733127","https://openalex.org/W1566384129","https://openalex.org/W1845465542","https://openalex.org/W1911843513","https://openalex.org/W1970851071","https://openalex.org/W1980411847","https://openalex.org/W1981322871","https://openalex.org/W1991365183","https://openalex.org/W1993782602","https://openalex.org/W1996295259","https://openalex.org/W2000198689","https://openalex.org/W2002827278","https://openalex.org/W2007993823","https://openalex.org/W2014669590","https://openalex.org/W2040247113","https://openalex.org/W2045422893","https://openalex.org/W2049018922","https://openalex.org/W2056072167","https://openalex.org/W2057859661","https://openalex.org/W2065301787","https://openalex.org/W2076443388","https://openalex.org/W2091693492","https://openalex.org/W2109726053","https://openalex.org/W2162241913"],"related_works":["https://openalex.org/W1980411847","https://openalex.org/W2141942565","https://openalex.org/W2040247113","https://openalex.org/W2284968461","https://openalex.org/W2296735113","https://openalex.org/W2013196704","https://openalex.org/W1996295259","https://openalex.org/W2069542608","https://openalex.org/W2004201494","https://openalex.org/W2065301787"],"abstract_inverted_index":{"Using":[0],"DNA":[1],"probes":[2],"specific":[3,224],"for":[4,161,204,245],"the":[5,9,22,25,28,35,67,70,87,124,132,138,143,162,168,207,276],"three":[6,91,139],"members":[7],"of":[8,24,27,37,47,51,56,77,89,101,105,107,123,126,128,135,137,145,151,172,192,209,215,226,232,278],"bean":[10,44,212],"(Phaseolus":[11],"vulgaris":[12],"L.)":[13],"phenylalanine":[14],"ammonia-lyase":[15],"(PAL)":[16],"gene":[17,280],"family,":[18],"we":[19],"have":[20],"studied":[21],"effects":[23,150],"product":[26],"PAL":[29,39,92,140,156,227,234,246],"reaction,":[30],"trans-cinnamic":[31],"acid":[32],"(CA),":[33],"on":[34,155,211],"appearance":[36,55,136],"individual":[38],"transcripts":[40,58,141,157,247],"in":[41,49,86,142,173,206,230,258,269],"suspension":[42],"cultured":[43],"cells.":[45,213],"Concentrations":[46],"CA":[48,78,129,152,210],"excess":[50],"10(-4)":[52],"molar":[53],"inhibited":[54],"elicitor-induced":[57,180],"encoding":[59],"PAL1,":[60,108],"PAL2,":[61,109],"and":[62,98,188,223,249],"PAL3":[63,111],"when":[64],"added":[65],"to":[66,118],"cells":[68,217],"at":[69,275],"same":[71],"time":[72,125],"as":[73,120,153,266],"fungal":[74],"elicitor.":[75],"Addition":[76],"4":[79],"hours":[80,115,239],"postelicitation":[81,130],"caused":[82],"a":[83,121,190,221,256,262,267,270],"major":[84],"reduction":[85],"levels":[88,236],"all":[90],"transcripts,":[93,112],"but":[94],"with":[95,218,255],"different":[96,133],"kinetics":[97],"subsequent":[99],"rates":[100,134],"recovery.":[102],"The":[103,148],"inhibition":[104],"accumulation":[106],"or":[110,167,261],"measured":[113],"3":[114],"after":[116],"exposure":[117],"elicitor,":[119],"function":[122],"addition":[127],"reflected":[131],"presence":[144],"elicitor":[146],"alone.":[147],"inhibitory":[149],"seen":[154],"were":[158,183,196],"not":[159,184],"observed":[160],"constitutively":[163],"expressed":[164],"transcript":[165,235],"H1,":[166],"elicitor-inducible":[169],"1,3-beta-D-glucanase.":[170],"Analysis":[171],"vitro":[174],"translated":[175],"polypeptides":[176],"showed":[177],"that":[178,189],"some":[179],"mRNA":[181,194],"activities":[182,195],"down-regulated":[185],"by":[186,198],"CA,":[187,199,260],"number":[191],"other":[193],"induced":[197],"thus":[200],"providing":[201],"further":[202],"evidence":[203],"specificity":[205],"action":[208],"Treatment":[214],"elicited":[216],"L-alpha-aminooxy-beta-phenylpropionic":[219],"acid,":[220],"potent":[222],"inhibitor":[225],"activity,":[228],"resulted":[229],"maintenance":[231],"elevated":[233],"beyond":[237],"12":[238],"postelicitation,":[240],"this":[241],"effect":[242],"being":[243],"greatest":[244],"2":[248],"3.":[250],"Our":[251],"results":[252],"are":[253],"consistent":[254],"model":[257],"which":[259],"derivative,":[263],"could":[264],"act":[265],"component":[268],"regulatory":[271],"feedback":[272],"system":[273],"operating":[274],"level":[277],"phenylpropanoid":[279],"transcription.":[281]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-29T09:56:32.521200","created_date":"2016-06-24T00:00:00"}
