{"id":"https://openalex.org/W1963459864","doi":"https://doi.org/10.1016/j.nmni.2015.06.005","title":"The bacterial pangenome as a new tool for analysing pathogenic bacteria","display_name":"The bacterial pangenome as a new tool for analysing pathogenic bacteria","publication_year":2015,"publication_date":"2015-06-26","ids":{"openalex":"https://openalex.org/W1963459864","doi":"https://doi.org/10.1016/j.nmni.2015.06.005","mag":"1963459864","pmid":"https://pubmed.ncbi.nlm.nih.gov/26442149","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4552756"},"language":"en","primary_location":{"id":"doi:10.1016/j.nmni.2015.06.005","doi":"https://doi.org/10.1016/j.nmni.2015.06.005","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.nmni.2015.06.005","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2052297515000529/pdf","source":{"id":"https://openalex.org/S2765012804","display_name":"New Microbes and New Infections","issn_l":"2052-2975","issn":["2052-2975"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","norway-1","oarl","poland-70","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Microbes and New Infections","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.sciencedirect.com/science/article/pii/S2052297515000529/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068541616","display_name":"Laetitia Rouli","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210107588","display_name":"Unit\u00e9 de Recherche sur les Maladies Infectieuses et Tropicales Emergentes","ror":"https://ror.org/01ws78v34","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210096427","https://openalex.org/I4210107588","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"L. Rouli","raw_affiliation_strings":["Aix Marseille Universit\u00e9, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille Universit\u00e9, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210107588","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077845477","display_name":"Vicky Merhej","orcid":"https://orcid.org/0000-0002-8688-6943","observed_orcids":["https://orcid.org/0000-0002-8688-6943"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210107588","display_name":"Unit\u00e9 de Recherche sur les Maladies Infectieuses et Tropicales Emergentes","ror":"https://ror.org/01ws78v34","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210096427","https://openalex.org/I4210107588","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"V. Merhej","raw_affiliation_strings":["Aix Marseille Universit\u00e9, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille Universit\u00e9, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210107588","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038418925","display_name":"Pierre\u2010Edouard Fournier","orcid":"https://orcid.org/0000-0001-8463-8885","observed_orcids":["https://orcid.org/0000-0001-8463-8885"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210107588","display_name":"Unit\u00e9 de Recherche sur les Maladies Infectieuses et Tropicales Emergentes","ror":"https://ror.org/01ws78v34","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210096427","https://openalex.org/I4210107588","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"P.-E. Fournier","raw_affiliation_strings":["Aix Marseille Universit\u00e9, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille Universit\u00e9, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210107588","https://openalex.org/I4210166444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074730004","display_name":"Didier Raoult","orcid":"https://orcid.org/0000-0002-0633-5974","observed_orcids":["https://orcid.org/0000-0002-0633-5974"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210107588","display_name":"Unit\u00e9 de Recherche sur les Maladies Infectieuses et Tropicales Emergentes","ror":"https://ror.org/01ws78v34","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210096427","https://openalex.org/I4210107588","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"D. Raoult","raw_affiliation_strings":["Aix Marseille Universit\u00e9, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aix Marseille Universit\u00e9, URMITE, UM63, CNRS 7278, IRD 198, Inserm 1095, 13005 Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210107588","https://openalex.org/I4210166444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5074730004"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210107588","https://openalex.org/I4210166444"],"apc_list":{"value":2770,"currency":"USD","value_usd":2770},"apc_paid":{"value":1151,"currency":"EUR","value_usd":1241},"fwci":10.7738,"has_fulltext":true,"cited_by_count":346,"citation_normalized_percentile":{"value":0.9926485,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"7","issue":null,"first_page":"72","last_page":"85"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.5741999745368958,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.5741999745368958,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4043000042438507,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.006599999964237213,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacterial-pangenome","display_name":"bacterial pangenome","score":0.9980000257492065},{"id":"https://openalex.org/keywords/core-genome","display_name":"core genome","score":0.9539999961853027},{"id":"https://openalex.org/keywords/accessory-genome","display_name":"accessory genome","score":1.0},{"id":"https://openalex.org/keywords/pathogenic-bacteria","display_name":"pathogenic bacteria","score":0.8799999952316284},{"id":"https://openalex.org/keywords/bacterial-lifestyle","display_name":"bacterial lifestyle","score":0.6589999794960022},{"id":"https://openalex.org/keywords/bacterial-taxonomy","display_name":"bacterial taxonomy","score":0.8360000252723694},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.9150000214576721},{"id":"https://openalex.org/keywords/shigella","display_name":"Shigella","score":0.9959999918937683}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5940552949905396},{"id":"https://openalex.org/C2778883795","wikidata":"https://www.wikidata.org/wiki/Q804517","display_name":"Pathogenic bacteria","level":3,"score":0.5886339545249939},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.49507442116737366},{"id":"https://openalex.org/C2776986154","wikidata":"https://www.wikidata.org/wiki/Q131029","display_name":"Shigella","level":4,"score":0.46740204095840454},{"id":"https://openalex.org/C2779616913","wikidata":"https://www.wikidata.org/wiki/Q7144817","display_name":"Pathogenic Escherichia coli","level":4,"score":0.4162246584892273},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.35629791021347046},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.33061912655830383},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28114110231399536},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13669082522392273}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1016/j.nmni.2015.06.005","doi":"https://doi.org/10.1016/j.nmni.2015.06.005","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.nmni.2015.06.005","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2052297515000529/pdf","source":{"id":"https://openalex.org/S2765012804","display_name":"New Microbes and New Infections","issn_l":"2052-2975","issn":["2052-2975"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","norway-1","oarl","poland-70","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Microbes and New Infections","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3570868","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4552756","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4552756","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4552756","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Microbes New Infect","raw_type":"Text"},{"id":"pmid:26442149","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26442149","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New microbes and new infections","raw_type":"Journal Article"},{"id":"pmh:oai:HAL:hal-01772702v1","doi":null,"is_oa":true,"landing_page_url":"https://amu.hal.science/hal-01772702","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"New Microbes and New Infections, 2015, 7, pp.72-85. &#x27E8;10.1016/j.nmni.2015.06.005&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:3f87bae7fa614e30a9ce5d7fb9d5327a","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/3f87bae7fa614e30a9ce5d7fb9d5327a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"New Microbes and New Infections, Vol 7, Iss C, Pp 72-85 (2015)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.nmni.2015.06.005","doi":"https://doi.org/10.1016/j.nmni.2015.06.005","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.nmni.2015.06.005","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2052297515000529/pdf","source":{"id":"https://openalex.org/S2765012804","display_name":"New Microbes and New Infections","issn_l":"2052-2975","issn":["2052-2975"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","norway-1","oarl","poland-70","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"New Microbes and New Infections","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.504800021648407,"id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1963459864.pdf","grobid_xml":"https://content.openalex.org/works/W1963459864.grobid-xml"},"referenced_works_count":113,"referenced_works":["https://openalex.org/W17958209","https://openalex.org/W63864663","https://openalex.org/W1519815462","https://openalex.org/W1535669424","https://openalex.org/W1577670423","https://openalex.org/W1968305507","https://openalex.org/W1969602792","https://openalex.org/W1970512445","https://openalex.org/W1973899074","https://openalex.org/W1977027195","https://openalex.org/W1983476090","https://openalex.org/W1983966050","https://openalex.org/W1987509519","https://openalex.org/W1989589166","https://openalex.org/W1989875176","https://openalex.org/W1990843049","https://openalex.org/W1992460001","https://openalex.org/W1994026268","https://openalex.org/W1994338054","https://openalex.org/W1997337736","https://openalex.org/W2000291196","https://openalex.org/W2000647779","https://openalex.org/W2002459863","https://openalex.org/W2004548026","https://openalex.org/W2007367248","https://openalex.org/W2008274231","https://openalex.org/W2010465132","https://openalex.org/W2012196585","https://openalex.org/W2012976783","https://openalex.org/W2013971010","https://openalex.org/W2022332540","https://openalex.org/W2023510054","https://openalex.org/W2025437701","https://openalex.org/W2040049824","https://openalex.org/W2040322093","https://openalex.org/W2041257508","https://openalex.org/W2049219395","https://openalex.org/W2051133017","https://openalex.org/W2052426953","https://openalex.org/W2055043387","https://openalex.org/W2055615325","https://openalex.org/W2055810512","https://openalex.org/W2056027400","https://openalex.org/W2058486042","https://openalex.org/W2060840163","https://openalex.org/W2061634675","https://openalex.org/W2064008533","https://openalex.org/W2065506174","https://openalex.org/W2072161444","https://openalex.org/W2072663939","https://openalex.org/W2088510902","https://openalex.org/W2093312216","https://openalex.org/W2093610003","https://openalex.org/W2096672157","https://openalex.org/W2099735862","https://openalex.org/W2100088735","https://openalex.org/W2100363512","https://openalex.org/W2104342875","https://openalex.org/W2106807209","https://openalex.org/W2107282968","https://openalex.org/W2107796268","https://openalex.org/W2109066352","https://openalex.org/W2109656602","https://openalex.org/W2110808124","https://openalex.org/W2114746383","https://openalex.org/W2114839482","https://openalex.org/W2114926981","https://openalex.org/W2115232821","https://openalex.org/W2117207428","https://openalex.org/W2117342463","https://openalex.org/W2118013215","https://openalex.org/W2123755502","https://openalex.org/W2124351063","https://openalex.org/W2125456570","https://openalex.org/W2126006180","https://openalex.org/W2126161931","https://openalex.org/W2126175202","https://openalex.org/W2127644105","https://openalex.org/W2127774996","https://openalex.org/W2130408443","https://openalex.org/W2130706420","https://openalex.org/W2131998787","https://openalex.org/W2132632499","https://openalex.org/W2133340476","https://openalex.org/W2134650310","https://openalex.org/W2134819521","https://openalex.org/W2135667219","https://openalex.org/W2137721714","https://openalex.org/W2144056254","https://openalex.org/W2146536773","https://openalex.org/W2147619435","https://openalex.org/W2149452073","https://openalex.org/W2150550043","https://openalex.org/W2151899778","https://openalex.org/W2152203259","https://openalex.org/W2153467346","https://openalex.org/W2157151120","https://openalex.org/W2157267947","https://openalex.org/W2157612734","https://openalex.org/W2158677343","https://openalex.org/W2159482845","https://openalex.org/W2160932169","https://openalex.org/W2165351233","https://openalex.org/W2166283168","https://openalex.org/W2166666507","https://openalex.org/W2166699767","https://openalex.org/W2167908576","https://openalex.org/W2167962054","https://openalex.org/W2168683487","https://openalex.org/W2169929748","https://openalex.org/W2171929540","https://openalex.org/W2172275102","https://openalex.org/W4297900846"],"related_works":["https://openalex.org/W4405920983","https://openalex.org/W2134819521","https://openalex.org/W4399474244","https://openalex.org/W4399582088","https://openalex.org/W2411322026","https://openalex.org/W2278624128","https://openalex.org/W4225510380","https://openalex.org/W2997125367","https://openalex.org/W4283643410","https://openalex.org/W4282972025"],"abstract_inverted_index":{"The":[0],"bacterial":[1],"pangenome":[2,26,60,76],"was":[3],"introduced":[4],"in":[5,8,21],"2005":[6],"and,":[7],"recent":[9],"years,":[10],"has":[11],"been":[12,101],"the":[13,25,33,37,41,56,59,75,86,93],"subject":[14,103],"of":[15,48,68,104],"many":[16],"studies.":[17],"Thanks":[18],"to":[19,36,92],"progress":[20],"next-generation":[22],"sequencing":[23],"methods,":[24,58],"can":[27],"be":[28,78],"divided":[29],"into":[30],"two":[31],"parts,":[32],"core":[34],"(common":[35],"studied":[38],"strains)":[39],"and":[40,62,96,109],"accessory":[42],"genome,":[43],"offering":[44],"a":[45,66,81,102],"large":[46],"panel":[47],"uses.":[49],"In":[50],"this":[51,91],"review,":[52],"we":[53],"have":[54,71,100],"presented":[55],"analysis":[57],"composition":[61],"its":[63],"application":[64],"as":[65,80],"study":[67],"lifestyle.":[69],"We":[70,89],"also":[72],"shown":[73],"that":[74],"may":[77],"used":[79],"new":[82],"tool":[83],"for":[84],"redefining":[85],"pathogenic":[87,110],"species.":[88],"applied":[90],"Escherichia":[94],"coli":[95],"Shigella":[97],"species,":[98],"which":[99],"controversy":[105],"regarding":[106],"their":[107],"taxonomic":[108],"position.":[111]},"counts_by_year":[{"year":2026,"cited_by_count":32},{"year":2025,"cited_by_count":36},{"year":2024,"cited_by_count":33},{"year":2023,"cited_by_count":62},{"year":2022,"cited_by_count":35},{"year":2021,"cited_by_count":42},{"year":2020,"cited_by_count":38},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":20},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
