{"id":"https://openalex.org/W1839422751","doi":"https://doi.org/10.4454/jpp.v90i3.682","title":"Demystifying the nomenclature of bacterial plant pathogens","display_name":"Demystifying the nomenclature of bacterial plant pathogens","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1839422751","doi":"https://doi.org/10.4454/jpp.v90i3.682","mag":"1839422751"},"language":"fr","primary_location":{"id":"pmh:oai:HAL:hal-02666685v1","doi":"https://doi.org/10.4454/jpp.v90i3.682","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02666685","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Plant Pathology, 2008, 90 (3), pp.403-417. &#x27E8;10.4454/jpp.v90i3.682&#x27E9;","raw_type":"info:eu-repo/semantics/article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057214809","display_name":"Carolee T. Bull","orcid":"https://orcid.org/0000-0002-2592-407X","observed_orcids":["https://orcid.org/0000-0002-2592-407X"]},"institutions":[{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carolee T. Bull","raw_affiliation_strings":["USDA - United States Department of Agriculture (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA - United States Department of Agriculture (United States)","institution_ids":["https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073514758","display_name":"S. H. De Boer","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1307613440","display_name":"Canadian Food Inspection Agency","ror":"https://ror.org/00qxr8t08","country_code":"CA","type":"government","lineage":["https://openalex.org/I1307613440"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"S. H. De Boer","raw_affiliation_strings":["CFIA - Canadian Food Inspection Agency (Canada)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CFIA - Canadian Food Inspection Agency (Canada)","institution_ids":["https://openalex.org/I1307613440"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112275004","display_name":"Timothy P. Denny","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy P. Denny","raw_affiliation_strings":["University of Georgia [USA] (Athens, GA 30602 - United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Georgia [USA] (Athens, GA 30602 - United States)","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023354517","display_name":"Giuseppe Firrao","orcid":"https://orcid.org/0000-0002-7890-0899","observed_orcids":["https://orcid.org/0000-0002-7890-0899"]},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Firrao","raw_affiliation_strings":["Universit\u00e0 degli Studi di Udine - University of Udine [Italie] (via Palladio 8, 33100 Udine - Italy)"],"raw_orcid":"https://orcid.org/0000-0002-7890-0899","affiliations":[{"raw_affiliation_string":"Universit\u00e0 degli Studi di Udine - University of Udine [Italie] (via Palladio 8, 33100 Udine - Italy)","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056972574","display_name":"Marion Fischer\u2010Le Saux","orcid":"https://orcid.org/0000-0002-9567-9444","observed_orcids":["https://orcid.org/0000-0002-9567-9444"]},"institutions":[{"id":"https://openalex.org/I4405263555","display_name":"Pathologie v\u00e9g\u00e9tale","ror":"https://ror.org/02prm7t27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4405263555"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marion Fischer\u2010Le Saux","raw_affiliation_strings":["Unit\u00e9 de recherche Pathologie v\u00e9g\u00e9tale et phytobact\u00e9riologie (France)"],"raw_orcid":"https://orcid.org/0000-0002-9567-9444","affiliations":[{"raw_affiliation_string":"Unit\u00e9 de recherche Pathologie v\u00e9g\u00e9tale et phytobact\u00e9riologie (France)","institution_ids":["https://openalex.org/I4405263555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112186358","display_name":"Gerry S. Saddler","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1299119326","display_name":"Scottish Agricultural Science Agency","ror":"https://ror.org/006sw6d69","country_code":"GB","type":"government","lineage":["https://openalex.org/I1299119326"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"G. S. Saddler","raw_affiliation_strings":["Science and Advice for Scottish Agriculture (United Kingdom)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Science and Advice for Scottish Agriculture (United Kingdom)","institution_ids":["https://openalex.org/I1299119326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068912743","display_name":"M. Scortichini","orcid":"https://orcid.org/0000-0003-1565-9097","observed_orcids":["https://orcid.org/0000-0003-1565-9097"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Scortichini","raw_affiliation_strings":["Centro di Ricerca per la Frutticoltura (Italy)"],"raw_orcid":"https://orcid.org/0000-0003-1565-9097","affiliations":[{"raw_affiliation_string":"Centro di Ricerca per la Frutticoltura (Italy)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009378121","display_name":"David E. Stead","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. E. Stead","raw_affiliation_strings":["Central Science Laboratory (France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central Science Laboratory (France)","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089173214","display_name":"Y. Takikawa","orcid":"https://orcid.org/0000-0002-9116-5243","observed_orcids":["https://orcid.org/0000-0002-9116-5243"]},"institutions":[{"id":"https://openalex.org/I1298590031","display_name":"Shizuoka University","ror":"https://ror.org/01w6wtk13","country_code":"JP","type":"education","lineage":["https://openalex.org/I1298590031"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Takikawa","raw_affiliation_strings":["Shizuoka University (Japan)"],"raw_orcid":"https://orcid.org/0000-0002-9116-5243","affiliations":[{"raw_affiliation_string":"Shizuoka University (Japan)","institution_ids":["https://openalex.org/I1298590031"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.8716,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.89380203,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"90","issue":"3","first_page":"403","last_page":"417"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plant-pathogenic-bacteria","display_name":"plant pathogenic bacteria","score":0.9100000262260437},{"id":"https://openalex.org/keywords/bacterial-nomenclature","display_name":"bacterial nomenclature","score":0.9419999718666077},{"id":"https://openalex.org/keywords/international-code-of-nomenclature-of-bacteria","display_name":"International Code of Nomenclature of Bacteria","score":0.972000002861023},{"id":"https://openalex.org/keywords/nomenclatural-priority","display_name":"nomenclatural priority","score":0.8190000057220459},{"id":"https://openalex.org/keywords/taxonomic-classification","display_name":"taxonomic classification","score":0.5950000286102295},{"id":"https://openalex.org/keywords/subspecies-names","display_name":"subspecies names","score":0.47699999809265137}],"concepts":[{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.9082942008972168},{"id":"https://openalex.org/C17966761","wikidata":"https://www.wikidata.org/wiki/Q68947","display_name":"Subspecies","level":2,"score":0.7923665046691895},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5771718621253967},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.5101204514503479},{"id":"https://openalex.org/C2778966571","wikidata":"https://www.wikidata.org/wiki/Q1972414","display_name":"Pathovar","level":5,"score":0.46674424409866333},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.3019440770149231},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.22666192054748535},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15971413254737854},{"id":"https://openalex.org/C2781463711","wikidata":"https://www.wikidata.org/wiki/Q131143","display_name":"Pseudomonas","level":3,"score":0.0},{"id":"https://openalex.org/C2776738503","wikidata":"https://www.wikidata.org/wiki/Q138058","display_name":"Pseudomonadaceae","level":4,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:HAL:hal-02666685v1","doi":"https://doi.org/10.4454/jpp.v90i3.682","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02666685","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Plant Pathology, 2008, 90 (3), pp.403-417. &#x27E8;10.4454/jpp.v90i3.682&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:air.uniud.it:11390/741257","doi":null,"is_oa":false,"landing_page_url":"http://hdl.handle.net/11390/741257","pdf_url":null,"source":{"id":"https://openalex.org/S4306401163","display_name":"Institutional Research Information System (University of Udine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I129043915","host_organization_name":"University of Udine","host_organization_lineage":["https://openalex.org/I129043915"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"mag:1839422751","doi":"https://doi.org/10.4454/jpp.v90i3.682","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-02666685","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"HAL (Le Centre pour la Communication Scientifique Directe)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1360395","https://openalex.org/W44647436","https://openalex.org/W253975112","https://openalex.org/W1414537665","https://openalex.org/W1500276280","https://openalex.org/W1541735207","https://openalex.org/W1714047042","https://openalex.org/W1979923641","https://openalex.org/W1982865332","https://openalex.org/W2030525767","https://openalex.org/W2031516078","https://openalex.org/W2047665883","https://openalex.org/W2056963142","https://openalex.org/W2060930841","https://openalex.org/W2076396246","https://openalex.org/W2080511583","https://openalex.org/W2083033718","https://openalex.org/W2086936543","https://openalex.org/W2088138371","https://openalex.org/W2089338877","https://openalex.org/W2105232843","https://openalex.org/W2105887413","https://openalex.org/W2108086264","https://openalex.org/W2109886572","https://openalex.org/W2109967572","https://openalex.org/W2118016898","https://openalex.org/W2118871799","https://openalex.org/W2128812016","https://openalex.org/W2131705791","https://openalex.org/W2135249105","https://openalex.org/W2135826078","https://openalex.org/W2136144607","https://openalex.org/W2137269749","https://openalex.org/W2138897857","https://openalex.org/W2139612237","https://openalex.org/W2143953871","https://openalex.org/W2146988500","https://openalex.org/W2151953236","https://openalex.org/W2152196471","https://openalex.org/W2153275390","https://openalex.org/W2153850195","https://openalex.org/W2155623469","https://openalex.org/W2156455849","https://openalex.org/W2163659850","https://openalex.org/W2163841046","https://openalex.org/W2164838420","https://openalex.org/W2165027548","https://openalex.org/W2167590339","https://openalex.org/W2169895835","https://openalex.org/W2170103422","https://openalex.org/W2170750885","https://openalex.org/W2208326493","https://openalex.org/W2327413685","https://openalex.org/W2409501960","https://openalex.org/W2427274663","https://openalex.org/W2521185852","https://openalex.org/W2969003966"],"related_works":["https://openalex.org/W7099753663","https://openalex.org/W2085520707","https://openalex.org/W2065713476","https://openalex.org/W2089338877","https://openalex.org/W1541735207","https://openalex.org/W2228077028","https://openalex.org/W2158631177","https://openalex.org/W2125661662","https://openalex.org/W4254114639","https://openalex.org/W971720992"],"abstract_inverted_index":{"A":[0,159,224],"unified":[1],"approach":[2],"to":[3,70,81,112,139,156,275,283,285],"naming":[4,137],"bacteria":[5,104,320],"ensures":[6],"accu-":[7],"rate":[8],"communication":[9],"among":[10,63],"scientists,":[11],"regulators":[12],"and":[13,37,42,77,79,98,105,142,182,185,190,205,229,271],"the":[14,22,47,50,73,96,130,143,146,163,171,200,216,235,238,245,286,300,314],"public.":[15],"Rules":[16,67,131,270],"for":[17,34,136,149,161,261,303],"nomenclature,":[18],"set":[19,132,292],"out":[20],"in":[21,95,110,134,145,199,279],"Interna-":[23],"tional":[24],"Code":[25],"of":[26,28,49,75,101,116,152,166,174,194,203,218,221,226,240,244,248,306,316],"Nomenclature":[27],"Bacteria":[29,155,243],"(ICNB),":[30],"ensure":[31],"that":[32,45,91,280],"proposals":[33],"new":[35],"names":[36,167,184,197,211,228,281],"combinations":[38],"follow":[39],"a":[40],"logical":[41],"standardized":[43],"progression":[44],"maintains":[46],"integrity":[48],"established":[51],"nomenclature":[52,260,315],"while":[53],"facilitat-":[54],"ing":[55],"changes":[56],"based":[57,214],"on":[58,124,215,237],"scientific":[59],"inquiry":[60],"into":[61],"relationships":[62],"organisms.":[64],"However,":[65],"these":[66],"only":[68],"apply":[69],"ranks":[71],"at":[72],"level":[74],"subspecies":[76,140,183],"above":[78],"not":[80],"lower":[82],"taxonomic":[83],"ranks.":[84],"The":[85],"pathovar":[86,210,227],"is":[87,92,106,168,213,232],"one":[88],"infraspecific":[89],"rank":[90],"widely":[93],"used":[94],"classification":[97,263],"nomen-":[99],"clature":[100],"plant":[102,118],"pathogenic":[103],"often":[107],"includ-":[108],"ed":[109],"legislation":[111],"provide":[113],"statutory":[114],"control":[115],"bacterial":[117],"pathogens.":[119],"Thus,":[120],"phytobacteriologists":[121],"must":[122],"rely":[123],"two":[125],"discontinuous":[126],"but,":[127],"complimentary":[128],"systems:":[129],"forth":[133],"ICNB":[135,287],"down":[138],"level,":[141],"Standards":[144,148,302],"International":[147,201,246,301],"Naming":[150,304],"Pathovars":[151,305],"Plant":[153,241,249,307],"Pathogenic":[154,242,308],"name":[157],"pathovars.":[158],"framework":[160],"determining":[162],"prior-":[164],"ity":[165],"provided":[169],"by":[170,234,293],"Approved":[172],"Lists":[173],"Bacte-":[175],"rial":[176],"Names,":[177],"which":[178],"gives":[179],"genus,":[180],"species":[181],"their":[186],"corresponding":[187],"type":[188],"strains,":[189],"subse-":[191],"quent":[192],"lists":[193],"validly":[195],"published":[196],"appearing":[198],"Journal":[202],"Systematic":[204],"Evolutionary":[206],"Mi-":[207],"crobiology.":[208],"For":[209],"priority":[212],"date":[217],"valid":[219],"publication":[220],"legitimate":[222],"names.":[223],"list":[225],"pathotype":[230],"strains":[231],"maintained":[233],"Committee":[236],"Taxonomy":[239],"Society":[247],"Pathology.":[250],"To":[251],"help":[252],"researchers":[253],"avoid":[254],"common":[255],"pitfalls":[256],"encountered":[257],"when":[258],"developing":[259],"novel":[262],"systems,":[264],"this":[265],"manuscript":[266],"clarifies":[267],"several":[268],"key":[269],"Standards.":[272],"It":[273],"aims":[274],"promote":[276],"best":[277],"practice,":[278],"developed":[282],"conform":[284],"should":[288],"also":[289],"consider":[290],"precedents":[291],"previous":[294],"nomenclatural":[295],"des-":[296],"ignations":[297],"as":[298],"per":[299],"Bacteria,":[309],"thus":[310],"ensuring":[311],"continuity":[312],"across":[313],"all":[317],"phytopatho-":[318],"genic":[319]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":6}],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2016-06-24T00:00:00"}
