{"id":"https://openalex.org/W180071965","doi":null,"title":"Mining Time-series Sequences of Reactions for Biologically Active Patterns in Metabolic Pathways.","display_name":"Mining Time-series Sequences of Reactions for Biologically Active Patterns in Metabolic Pathways.","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W180071965","mag":"180071965"},"language":"en","primary_location":{"id":"pmh:oai:CiteSeerX.psu:10.1.1.639.2716","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.639.2716","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.di.uniba.it/~ndm/publications/files/biba07sebd-m.pdf","raw_type":"text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013855295","display_name":"Marenglen Biba","orcid":"https://orcid.org/0000-0003-2336-8070","observed_orcids":["https://orcid.org/0000-0003-2336-8070"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marenglen Biba","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035635558","display_name":"Floriana Esposito","orcid":"https://orcid.org/0000-0002-1075-3239","observed_orcids":["https://orcid.org/0000-0002-1075-3239"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Floriana Esposito","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1075-3239","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068783500","display_name":"Stefano Ferilli","orcid":"https://orcid.org/0000-0003-1118-0601","observed_orcids":["https://orcid.org/0000-0003-1118-0601"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefano Ferilli","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-1118-0601","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047232379","display_name":"Nicola Di Mauro","orcid":"https://orcid.org/0000-0002-5858-1931","observed_orcids":["https://orcid.org/0000-0002-5858-1931","https://orcid.org/0009-0004-2540-4164"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicola Di Mauro","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-5858-1931","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5073443868","display_name":"Teresa M. A. Basile","orcid":"https://orcid.org/0000-0003-4558-3249","observed_orcids":["https://orcid.org/0000-0003-4558-3249"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Teresa M. A. Basile","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-4558-3249","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02352093,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"40","last_page":"51"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5889000296592712,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5889000296592712,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.11670000106096268,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.09049999713897705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-pathways","display_name":"metabolic pathways","score":0.7730000019073486},{"id":"https://openalex.org/keywords/metabolomics","display_name":"metabolomics","score":0.7649999856948853},{"id":"https://openalex.org/keywords/metabolic-profiling","display_name":"metabolite profiling","score":0.5370000004768372},{"id":"https://openalex.org/keywords/metabolic-networks","display_name":"metabolic networks","score":0.7749999761581421},{"id":"https://openalex.org/keywords/uncertainty-modeling","display_name":"uncertainty modeling","score":0.843999981880188}],"concepts":[{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.5348467230796814},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4529307782649994},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43193960189819336},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4208190143108368},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3395450711250305},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10798177123069763},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:CiteSeerX.psu:10.1.1.639.2716","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.639.2716","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.di.uniba.it/~ndm/publications/files/biba07sebd-m.pdf","raw_type":"text"},{"id":"pmh:oai:ricerca.uniba.it:11586/128363","doi":null,"is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/128363","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"mag:180071965","doi":null,"is_oa":false,"landing_page_url":"http://dblp.uni-trier.de/db/conf/sebd/sebd2007.html#BibaEFMB07","pdf_url":null,"source":{"id":"https://openalex.org/S4306529400","display_name":"SEBD","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"SEBD","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1561844010","https://openalex.org/W2034873249","https://openalex.org/W2049633694","https://openalex.org/W2101335378","https://openalex.org/W2108544104","https://openalex.org/W2111682035","https://openalex.org/W2120714068","https://openalex.org/W2126469373","https://openalex.org/W2126969584","https://openalex.org/W2134923619","https://openalex.org/W2143784594","https://openalex.org/W2163855763","https://openalex.org/W2166430819","https://openalex.org/W2283350629"],"related_works":["https://openalex.org/W3216918299","https://openalex.org/W6983248582","https://openalex.org/W1990018775","https://openalex.org/W2129665266","https://openalex.org/W7096391754","https://openalex.org/W3005410459","https://openalex.org/W1980911621","https://openalex.org/W2148477765","https://openalex.org/W2276343278","https://openalex.org/W7100362165"],"abstract_inverted_index":{"Abstract.":[0],"Large":[1],"quantities":[2],"of":[3,16,75],"metabolic":[4,82],"profiling":[5],"data":[6],"are":[7],"being":[8],"gathered":[9],"intensively":[10],"in":[11,21,81,98],"the":[12,43],"rapidly":[13],"growing":[14],"field":[15],"Metabolomics.":[17],"However,":[18],"such":[19],"data,":[20],"order":[22],"to":[23,45,59,71],"provide":[24,56],"knowledge,":[25],"must":[26],"be":[27],"machine-explored":[28],"by":[29],"robust":[30,93],"methods":[31,41],"that":[32,88],"deal":[33],"with":[34],"complexity":[35,50],"and":[36,48],"uncertainty.":[37],"Symbolic":[38],"machine":[39,53],"learning":[40,54],"have":[42],"power":[44],"model":[46],"structural":[47],"relational":[49],"while":[51],"statistical":[52],"ones":[55],"principled":[57],"approaches":[58],"uncertainty":[60],"modeling.":[61],"In":[62],"this":[63],"paper,":[64],"we":[65],"apply":[66],"a":[67,92],"hybrid":[68],"symbolic-statistical":[69],"framework":[70],"mine":[72],"time-series":[73],"sequences":[74],"reactions":[76],"for":[77,95],"biologically":[78],"active":[79],"paths":[80],"networks.":[83],"We":[84],"show":[85],"through":[86],"experiments":[87],"our":[89],"approach":[90],"provides":[91],"methodology":[94],"knowledge":[96],"discovery":[97],"Systems":[99],"Biology.":[100],"1":[101]},"counts_by_year":[],"updated_date":"2026-11-01T11:40:01.658920","created_date":"2016-06-24T00:00:00"}
