{"id":"https://openalex.org/W1732648485","doi":null,"title":"Patterns of interactions of reaction pairs in metabolic networks.","display_name":"Patterns of interactions of reaction pairs in metabolic networks.","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1732648485","mag":"1732648485","pmid":"https://pubmed.ncbi.nlm.nih.gov/17503370"},"language":"en","primary_location":{"id":"pmid:17503370","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17503370","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome informatics. International Conference on Genome Informatics","raw_type":"Comparative Study"},"volume":null,"type":"conference-paper","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057273635","display_name":"J\u00f3zsef Bruck","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00f3zsef Bruck","raw_affiliation_strings":["Theoretical Biophysics, Institute of Biology, Humboldt University, Invalidenstr. 42, D-10115 Berlin, Germany. jbruck@rz.hu-berlin.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Theoretical Biophysics, Institute of Biology, Humboldt University, Invalidenstr. 42, D-10115 Berlin, Germany. jbruck@rz.hu-berlin.de","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026460206","display_name":"Oliver Ebenh\u00f6h","orcid":"https://orcid.org/0000-0002-7229-7398","observed_orcids":["https://orcid.org/0000-0002-7229-7398"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Oliver Ebenh\u00f6h","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5112761243","display_name":"Reinhart Heinrich","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Reinhart Heinrich","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"17","issue":"1","first_page":"208","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8208000063896179,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8208000063896179,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.1662999987602234,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.009100000374019146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-networks","display_name":"metabolic networks","score":0.9760000109672546}],"concepts":[{"id":"https://openalex.org/C110484373","wikidata":"https://www.wikidata.org/wiki/Q264398","display_name":"Adjacency list","level":2,"score":0.6736537218093872},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6621164083480835},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.5962852835655212},{"id":"https://openalex.org/C161677786","wikidata":"https://www.wikidata.org/wiki/Q2478475","display_name":"Neighbourhood (mathematics)","level":2,"score":0.5649031400680542},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5288580060005188},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5285203456878662},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41917818784713745},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3397097587585449},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33173978328704834},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.232712984085083},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1599237620830536},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.159091055393219},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09038472175598145},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.05909624695777893},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005941","descriptor_name":"Glucokinase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true}],"locations_count":3,"locations":[{"id":"pmid:17503370","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17503370","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome informatics. International Conference on Genome Informatics","raw_type":"Comparative Study"},{"id":"pmh:oai:pure.mpg.de:item_1817590","doi":null,"is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0014-33AC-5","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genome Informatics","raw_type":"info:eu-repo/semantics/article"},{"id":"mag:1732648485","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17503370","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1243197228","https://openalex.org/W1484198052","https://openalex.org/W1873506857","https://openalex.org/W1983202741","https://openalex.org/W2017987256","https://openalex.org/W2034993111","https://openalex.org/W2046760236","https://openalex.org/W2117486132","https://openalex.org/W2139553051","https://openalex.org/W2144885342","https://openalex.org/W2153624566","https://openalex.org/W2159482845"],"related_works":["https://openalex.org/W7099501997","https://openalex.org/W1976334064","https://openalex.org/W2893420169","https://openalex.org/W2129702158","https://openalex.org/W7099404282","https://openalex.org/W2136060005","https://openalex.org/W1603523756","https://openalex.org/W4230529126","https://openalex.org/W7095577718","https://openalex.org/W1608298134"],"abstract_inverted_index":{"A":[0,39],"large":[1,144],"scale":[2,145],"structural":[3],"analysis":[4],"of":[5,26,32,60,78,96,107,141,149],"metabolic":[6,80],"networks":[7],"is":[8,41,73],"presented":[9],"focusing":[10],"on":[11,118],"neighbourhood":[12],"relationships":[13,49,137],"between":[14,111],"individual":[15],"reactions.":[16],"We":[17,87,131],"define":[18],"two":[19,116],"reactions":[20,62,81,112],"to":[21,37,75,133],"be":[22],"neighbored":[23],"if":[24],"one":[25,119],"them":[27],"provides":[28],"the":[29,35,58,65,84,91],"necessary":[30],"set":[31,77],"substances":[33],"for":[34],"other":[36],"proceed.":[38],"method":[40,72],"developed":[42],"which":[43],"allows":[44],"determining":[45],"all":[46,108],"possible":[47,94],"neighborhood":[48,136],"categorized":[50],"as":[51,138],"interaction":[52],"patterns.":[53],"These":[54],"patterns":[55,99,127],"differ":[56],"in":[57,64,83,102,143],"types":[59,95],"participating":[61],"and":[63],"way":[66],"they":[67],"share":[68],"their":[69],"reactants.":[70],"The":[71],"applied":[74],"a":[76,129,139],"4795":[79],"contained":[82],"KEGG":[85],"database.":[86],"show":[88],"that":[89],"from":[90],"1547":[92],"theoretically":[93],"interactions":[97,109,123],"282":[98],"are":[100],"found":[101],"metabolism.":[103,150],"More":[104],"than":[105],"55%":[106],"occur":[110],"with":[113],"at":[114],"most":[115],"reactants":[117],"side.":[120],"In":[121],"these":[122,135],"only":[124],"25":[125],"different":[126],"play":[128],"role.":[130],"propose":[132],"use":[134],"concept":[140],"adjacency":[142],"graph":[146],"theoretical":[147],"analyses":[148]},"counts_by_year":[],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
