{"id":"https://openalex.org/W167991535","doi":"https://doi.org/10.1007/978-1-4614-0782-9_6","title":"De Novo Short-Read Assembly","display_name":"De Novo Short-Read Assembly","publication_year":2011,"publication_date":"2011-09-22","ids":{"openalex":"https://openalex.org/W167991535","doi":"https://doi.org/10.1007/978-1-4614-0782-9_6","mag":"167991535"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-4614-0782-9_6","doi":"https://doi.org/10.1007/978-1-4614-0782-9_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-4614-0782-9_6","pdf_url":null,"source":{"id":"https://openalex.org/S4306463937","display_name":"Springer eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics for High Throughput Sequencing","raw_type":"book-chapter"},"volume":{"id":"https://openalex.org/W1531668109","display_name":"Bioinformatics for High Throughput Sequencing"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103175263","display_name":"Douglas W. Bryant","orcid":"https://orcid.org/0000-0003-4092-0330","observed_orcids":["https://orcid.org/0000-0003-4092-0330"]},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Douglas W. Bryant","raw_affiliation_strings":["Department of Botany and Plant Pathology, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, 97331, USA","Department of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, 97331, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, 97331, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044815595","display_name":"Todd C. Mockler","orcid":"https://orcid.org/0000-0002-0462-5775","observed_orcids":["https://orcid.org/0000-0002-0462-5775"]},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Todd C. Mockler","raw_affiliation_strings":["Department of Botany and Plant Pathology, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, 97331, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5103175263"],"corresponding_institution_ids":["https://openalex.org/I131249849"],"apc_list":null,"apc_paid":null,"fwci":0.4152,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.57984629,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"85","last_page":"105"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-novo-genome-assembly","display_name":"de novo genome assembly","score":0.9229999780654907},{"id":"https://openalex.org/keywords/short-read-sequencing","display_name":"short-read sequencing","score":0.925000011920929},{"id":"https://openalex.org/keywords/next-generation-sequencing","display_name":"next-generation sequencing","score":0.9760000109672546},{"id":"https://openalex.org/keywords/assembler-comparison","display_name":"assembler comparison","score":0.6370000243186951},{"id":"https://openalex.org/keywords/high-throughput-sequencing-data","display_name":"high-throughput sequencing data","score":0.6129999756813049}],"concepts":[{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.7215901613235474},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5998104810714722},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5560810565948486},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.545485258102417},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.5035445094108582},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4036203622817993},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.3371323347091675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23878777027130127},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.1724851131439209},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16878175735473633},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12276804447174072},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.07379895448684692},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06339433789253235},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-1-4614-0782-9_6","doi":"https://doi.org/10.1007/978-1-4614-0782-9_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-4614-0782-9_6","pdf_url":null,"source":{"id":"https://openalex.org/S4306463937","display_name":"Springer eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics for High Throughput Sequencing","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1635391495","https://openalex.org/W1966822396","https://openalex.org/W1970939265","https://openalex.org/W2002638840","https://openalex.org/W2009266444","https://openalex.org/W2022910024","https://openalex.org/W2023911006","https://openalex.org/W2041319615","https://openalex.org/W2054468433","https://openalex.org/W2066827579","https://openalex.org/W2092277118","https://openalex.org/W2096634299","https://openalex.org/W2097529842","https://openalex.org/W2127651281","https://openalex.org/W2128114769","https://openalex.org/W2134800079","https://openalex.org/W2136651963","https://openalex.org/W2142749416","https://openalex.org/W2144662851","https://openalex.org/W2151017710","https://openalex.org/W2155845142","https://openalex.org/W2159998739","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2171475724"],"related_works":["https://openalex.org/W2152073175","https://openalex.org/W2537565528","https://openalex.org/W1995663053","https://openalex.org/W2522409137","https://openalex.org/W2127768708","https://openalex.org/W1972924519","https://openalex.org/W2161546116","https://openalex.org/W102900600","https://openalex.org/W849715610","https://openalex.org/W2941874147"],"abstract_inverted_index":null,"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-10-10T09:11:00.788812","created_date":"2016-06-24T00:00:00"}