{"id":"https://openalex.org/W1614769882","doi":null,"title":"Graph-based methods for discovery browsing with semantic predications.","display_name":"Graph-based methods for discovery browsing with semantic predications.","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W1614769882","mag":"1614769882","pmid":"https://pubmed.ncbi.nlm.nih.gov/22195216","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3243228"},"language":"en","primary_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3243228","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3243228","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Annu Symp Proc","raw_type":"Text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3243228","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078854954","display_name":"Bart\u0142omiej Wilkowski","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Bart\u0142omiej Wilkowski","raw_affiliation_strings":["Technical University of Denmark, DTU Informatics, Kongens Lyngby, DK-2800, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, DTU Informatics, Kongens Lyngby, DK-2800, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062552700","display_name":"Marcelo Fiszman B","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marcelo Fiszman","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032442498","display_name":"Christopher M. Miller","orcid":"https://orcid.org/0000-0001-7766-8365","observed_orcids":["https://orcid.org/0000-0001-7766-8365"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christopher M Miller","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088626648","display_name":"Dimitar Hristovski","orcid":"https://orcid.org/0000-0001-6908-0246","observed_orcids":["https://orcid.org/0000-0001-6908-0246"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dimitar Hristovski","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091313166","display_name":"Sivaram Arabandi","orcid":"https://orcid.org/0000-0002-2973-6228","observed_orcids":["https://orcid.org/0000-0002-2973-6228"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sivaram Arabandi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049096404","display_name":"Graciela Rosemblat","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Graciela Rosemblat","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5046137010","display_name":"Thomas C. Rindflesch","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas C Rindflesch","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.2147,"has_fulltext":true,"cited_by_count":58,"citation_normalized_percentile":{"value":0.86956522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"2011","issue":null,"first_page":"1514","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/literature-based-discovery","display_name":"literature-based discovery","score":0.9639999866485596},{"id":"https://openalex.org/keywords/semrep","display_name":"SemRep","score":0.6919999718666077},{"id":"https://openalex.org/keywords/graph-based-navigation","display_name":"graph-based navigation","score":0.703000009059906},{"id":"https://openalex.org/keywords/depressive-disorders","display_name":"depressive disorders","score":0.8009999990463257},{"id":"https://openalex.org/keywords/inflammation","display_name":"inflammation","score":0.9729999899864197},{"id":"https://openalex.org/keywords/circadian-rhythm","display_name":"circadian rhythm","score":0.9020000100135803},{"id":"https://openalex.org/keywords/norepinephrine","display_name":"norepinephrine","score":0.9919999837875366}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.729004979133606},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5570549964904785},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5002772808074951},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4683472514152527},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36483681201934814},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003866","descriptor_name":"Depressive Disorder","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"pmh:oai:pubmedcentral.nih.gov:3243228","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3243228","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Annu Symp Proc","raw_type":"Text"},{"id":"pmid:22195216","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22195216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA ... Annual Symposium proceedings. AMIA Symposium","raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:publications/64a18956-659d-4e93-b72a-17e23219c8aa","doi":null,"is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/64a18956-659d-4e93-b72a-17e23219c8aa","pdf_url":"https://orbit.dtu.dk/en/publications/64a18956-659d-4e93-b72a-17e23219c8aa","source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wilkowski , B , Fiszman , M , Miller , C M , Hristovski , D , Arabandi , S , Rosemblat , G & Rindflesch , T C 2011 , ' Graph-Based Methods for Discovery Browsing with Semantic Predications ' , A A M I Annual Meeting. Proceedings , vol. 2011 , pp. 1514-1523 . < http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3243228/ >","raw_type":"contributionToPeriodical"},{"id":"mag:1614769882","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22195216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3243228","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3243228","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Annu Symp Proc","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320321999","display_name":"Lundbeckfonden","ror":"https://ror.org/03hz8wd80"},{"id":"https://openalex.org/F4320322454","display_name":"Otto M\u00f8nsteds Fond","ror":"https://ror.org/02dt42634"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332382","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/0526p1y61"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1614769882.pdf","grobid_xml":"https://content.openalex.org/works/W1614769882.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W30760744","https://openalex.org/W1509877324","https://openalex.org/W1599615952","https://openalex.org/W1645475532","https://openalex.org/W1650797637","https://openalex.org/W1699455313","https://openalex.org/W1705421561","https://openalex.org/W1741748490","https://openalex.org/W1985953409","https://openalex.org/W1987988983","https://openalex.org/W2006321561","https://openalex.org/W2006593760","https://openalex.org/W2011726136","https://openalex.org/W2020159596","https://openalex.org/W2021792600","https://openalex.org/W2022440889","https://openalex.org/W2024030746","https://openalex.org/W2037442313","https://openalex.org/W2039199798","https://openalex.org/W2051616244","https://openalex.org/W2056944867","https://openalex.org/W2064481302","https://openalex.org/W2065943126","https://openalex.org/W2071697888","https://openalex.org/W2072528200","https://openalex.org/W2076395494","https://openalex.org/W2087557786","https://openalex.org/W2091262011","https://openalex.org/W2094070484","https://openalex.org/W2096924058","https://openalex.org/W2097740790","https://openalex.org/W2098201295","https://openalex.org/W2101887680","https://openalex.org/W2103427999","https://openalex.org/W2115007282","https://openalex.org/W2122402213","https://openalex.org/W2132022337","https://openalex.org/W2133370410","https://openalex.org/W2135408592","https://openalex.org/W2153042537","https://openalex.org/W2164859678","https://openalex.org/W2534652523","https://openalex.org/W4366077702"],"related_works":["https://openalex.org/W2734086462","https://openalex.org/W1599615952","https://openalex.org/W2955614654","https://openalex.org/W2007609032","https://openalex.org/W5208458","https://openalex.org/W109117641","https://openalex.org/W2281055978","https://openalex.org/W2989826726","https://openalex.org/W2401857473","https://openalex.org/W1981229377"],"abstract_inverted_index":{"We":[0],"present":[1],"an":[2],"extension":[3],"to":[4,12,147],"literature-based":[5,89],"discovery":[6,90],"that":[7,33],"goes":[8],"beyond":[9],"making":[10],"discoveries":[11],"a":[13,28,42,68,101],"principled":[14],"way":[15],"of":[16,21,30,54,65,70,84,103,121,135,150,156],"navigating":[17],"through":[18,37,51],"selected":[19],"aspects":[20],"some":[22],"biomedical":[23],"domain.":[24],"The":[25,92,111,123],"method":[26],"is":[27,125],"type":[29],"\"discovery":[31],"browsing\"":[32],"guides":[34],"the":[35,38,73,81,133,140,151],"user":[36,74],"research":[39],"literature":[40],"on":[41,132],"specified":[43],"phenomenon.":[44],"Poorly":[45],"understood":[46],"relationships":[47,59,85],"may":[48,145],"be":[49,62],"explored":[50],"novel":[52],"points":[53],"view,":[55],"and":[56,108,130,139,154],"potentially":[57],"interesting":[58],"need":[60],"not":[61],"known":[63],"ahead":[64],"time.":[66],"In":[67],"process":[69],"\"cooperative":[71],"reciprocity\"":[72],"iteratively":[75],"focuses":[76,131],"system":[77,112],"output,":[78],"thus":[79],"controlling":[80],"large":[82],"number":[83],"often":[86],"generated":[87],"in":[88,115],"systems.":[91],"underlying":[93],"technology":[94],"exploits":[95],"SemRep":[96],"semantic":[97],"predications":[98],"represented":[99],"as":[100],"graph":[102],"interconnected":[104],"nodes":[105],"(predication":[106],"arguments)":[107],"edges":[109],"(predicates).":[110],"suggests":[113],"paths":[114],"this":[116,157],"graph,":[117],"which":[118],"represent":[119],"chains":[120],"relationships.":[122],"methodology":[124],"illustrated":[126],"with":[127],"depressive":[128],"disorder":[129],"interaction":[134],"inflammation,":[136],"circadian":[137],"phenomena,":[138],"neurotransmitter":[141],"norepinephrine.":[142],"Insight":[143],"provided":[144],"contribute":[146],"enhanced":[148],"understanding":[149],"pathophysiology,":[152],"treatment,":[153],"prevention":[155],"disorder.":[158]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":5}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}