{"id":"https://openalex.org/W1595788846","doi":null,"title":"Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs.","display_name":"Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs.","publication_year":2002,"publication_date":"2002-01-01","ids":{"openalex":"https://openalex.org/W1595788846","mag":"1595788846","pmid":"https://pubmed.ncbi.nlm.nih.gov/12611624"},"language":"en","primary_location":{"id":"pmid:12611624","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12611624","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In silico biology","raw_type":"Journal Article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017431361","display_name":"Addie Nina Olsen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Addie Nina Olsen","raw_affiliation_strings":["Institute of Molecular Biology, University of Copenhagen, Oster Farimagsgade 2A, DK-1353 Copenhagen K, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology, University of Copenhagen, Oster Farimagsgade 2A, DK-1353 Copenhagen K, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052712917","display_name":"John Mundy","orcid":"https://orcid.org/0000-0001-7490-4588","observed_orcids":["https://orcid.org/0000-0001-7490-4588"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John Mundy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5036013430","display_name":"Karen Skriver","orcid":"https://orcid.org/0000-0003-2225-4012","observed_orcids":["https://orcid.org/0000-0003-2225-4012"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Karen Skriver","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.0911,"has_fulltext":false,"cited_by_count":90,"citation_normalized_percentile":{"value":0.90852155,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"2","issue":"4","first_page":"441","last_page":"51"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.8101000189781189,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.8101000189781189,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.033799998462200165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10869","display_name":"Polysaccharides and Plant Cell Walls","score":0.017000000923871994,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.8410000205039978},{"id":"https://openalex.org/keywords/plant-derived-peptides","display_name":"plant peptides","score":0.7020000219345093},{"id":"https://openalex.org/keywords/cationic-peptides","display_name":"cationic peptides","score":0.8980000019073486},{"id":"https://openalex.org/keywords/secreted-peptides","display_name":"secreted peptides","score":0.7250000238418579},{"id":"https://openalex.org/keywords/signal-peptide","display_name":"signal peptide","score":0.5950000286102295},{"id":"https://openalex.org/keywords/conserved-motifs","display_name":"conserved motifs","score":0.6669999957084656},{"id":"https://openalex.org/keywords/gene-family-identification","display_name":"gene family identification","score":0.6190000176429749},{"id":"https://openalex.org/keywords/gene-expression-patterns","display_name":"gene expression patterns","score":0.6299999952316284},{"id":"https://openalex.org/keywords/intercellular-communication","display_name":"intercellular communication","score":0.7200000286102295}],"concepts":[{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.918654203414917},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.716335654258728},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6942753195762634},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6160914301872253},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6011486649513245},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.566166341304779},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.5351278185844421},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.5163477659225464},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5029684901237488},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.48821356892585754},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.45579323172569275},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.42464056611061096},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.41117459535598755},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.07242536544799805}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002412","descriptor_name":"Cations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020133","descriptor_name":"Reverse Transcriptase Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"pmid:12611624","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12611624","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In silico biology","raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/8d849740-9542-11dd-86a6-000ea68e967b","doi":null,"is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/8d849740-9542-11dd-86a6-000ea68e967b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Olsen, A N, Mundy, J & Skriver, K 2002, 'Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs.', In Silico Biology, vol. 2, no. 4, pp. 441-51.","raw_type":"info:eu-repo/semantics/article"},{"id":"mag:1595788846","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12611624","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1494075612","https://openalex.org/W1499450468","https://openalex.org/W1569852259","https://openalex.org/W1573503091","https://openalex.org/W1695420079","https://openalex.org/W1940988901","https://openalex.org/W1967772103","https://openalex.org/W1980496592","https://openalex.org/W1986157332","https://openalex.org/W1994704939","https://openalex.org/W1996373702","https://openalex.org/W2015065370","https://openalex.org/W2024496775","https://openalex.org/W2026238074","https://openalex.org/W2042502086","https://openalex.org/W2047572594","https://openalex.org/W2057147130","https://openalex.org/W2060306551","https://openalex.org/W2062251479","https://openalex.org/W2093853758","https://openalex.org/W2096744087","https://openalex.org/W2096921404","https://openalex.org/W2106882534","https://openalex.org/W2118817344","https://openalex.org/W2144634347","https://openalex.org/W2145734679","https://openalex.org/W2152458080","https://openalex.org/W2158714788","https://openalex.org/W2171091522"],"related_works":["https://openalex.org/W2148874577","https://openalex.org/W1977015130","https://openalex.org/W1983709574","https://openalex.org/W7130731508","https://openalex.org/W2571814563","https://openalex.org/W2083883211","https://openalex.org/W7127272957","https://openalex.org/W7100970306","https://openalex.org/W4387467312","https://openalex.org/W297508457"],"abstract_inverted_index":{"Few":[0],"plant":[1],"peptides":[2,33,120,153],"involved":[3],"in":[4,134,204],"intercellular":[5],"communication":[6],"have":[7],"been":[8,146],"experimentally":[9],"isolated.":[10],"Sequence":[11],"analysis":[12,78,181,219],"of":[13,31,38,79,109,115,140,150,185,199,207,217],"the":[14,29,39,68,107,151,186,205,208],"Arabidopsis":[15,40,88,113,187,211],"thaliana":[16,212],"genome":[17,41,206],"has":[18,43],"revealed":[19],"numerous":[20],"transmembrane":[21],"receptors":[22],"predicted":[23,62,119,152],"to":[24,47,92,106,159,172,225],"bind":[25],"proteinacious":[26],"ligands,":[27],"emphasizing":[28],"importance":[30],"identifying":[32],"with":[34,100],"signaling":[35],"function.":[36],"Annotation":[37],"sequence":[42,127,157],"made":[44],"it":[45],"possible":[46],"identify":[48,93],"peptide-encoding":[49],"genes.":[50,117],"However,":[51],"such":[52],"annotational":[53],"identification":[54,108,198],"is":[55],"impeded":[56],"because":[57],"small":[58],"genes":[59,85,142,188],"are":[60,121,189],"poorly":[61],"by":[63,83,123],"gene-prediction":[64],"algorithms,":[65],"thus":[66],"prompting":[67],"alternative":[69],"approaches":[70],"described":[71],"here.":[72],"We":[73,169],"initially":[74],"performed":[75],"a":[76,110,124,135,164,200,215],"systematic":[77,218],"short":[80],"polypeptides":[81],"encoded":[82],"annotated":[84],"on":[86],"two":[87],"chromosomes":[89],"using":[90],"SignalP":[91],"potentially":[94],"secreted":[95,103],"peptides.":[96],"Subsequent":[97],"homology":[98,221],"searches":[99],"selected,":[101],"putatively":[102],"peptides,":[104],"led":[105],"potential,":[111],"large":[112,201],"family":[114,175,203],"34":[116],"The":[118,138,197],"characterized":[122],"conserved":[125],"C-terminal":[126],"motif":[128],"and":[129,191,220],"additional":[130],"primary":[131],"structure":[132],"conservation":[133],"core":[136],"region.":[137],"majority":[139],"these":[141],"had":[143],"not":[144],"previously":[145],"annotated.":[147],"A":[148],"subset":[149],"show":[154],"high":[155],"overall":[156],"similarity":[158],"Rapid":[160],"Alkalinization":[161],"Factor":[162],"(RALF),":[163],"peptide":[165,174,226],"isolated":[166],"from":[167],"tobacco.":[168],"therefore":[170],"refer":[171],"this":[173],"as":[176],"RALFL":[177],"for":[178],"RALF-Like.":[179],"RT-PCR":[180],"confirmed":[182],"that":[183,192,214],"several":[184],"expressed":[190],"their":[193],"expression":[194],"patterns":[195],"vary.":[196],"gene":[202],"model":[209],"organism":[210],"demonstrates":[213],"combination":[216],"searching":[222],"can":[223],"contribute":[224],"discovery.":[227]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":9}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}