{"id":"https://openalex.org/W1561041196","doi":null,"title":"Cold Acclimation in oats and other plants: Dissecting low temperature responses using a comparative genomic approach.","display_name":"Cold Acclimation in oats and other plants: Dissecting low temperature responses using a comparative genomic approach.","publication_year":2009,"publication_date":"2009-02-27","ids":{"openalex":"https://openalex.org/W1561041196","mag":"1561041196"},"language":"en","primary_location":{"id":"pmh:oai:gupea.ub.gu.se:2077/19495","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/2077/19495","pdf_url":"http://hdl.handle.net/2077/19495","source":{"id":"https://openalex.org/S4306401168","display_name":"Gothenburg University Publications Electronic Archive (Gothenburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I881427289","host_organization_name":"University of Gothenburg","host_organization_lineage":["https://openalex.org/I881427289"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Doctoral thesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2077/19495","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015572840","display_name":"Marcus Br\u00e4utigam","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Marcus Br\u00e4utigam","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5015572840"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10014","display_name":"Plant Stress Responses and Tolerance","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10014","display_name":"Plant Stress Responses and Tolerance","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.005799999926239252,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12115","display_name":"Genetic and Environmental Crop Studies","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cold-acclimation","display_name":"cold acclimation","score":1.0},{"id":"https://openalex.org/keywords/oat","display_name":"oat","score":0.5730000138282776},{"id":"https://openalex.org/keywords/avena-sativa","display_name":"Avena sativa","score":0.9919999837875366},{"id":"https://openalex.org/keywords/cold-tolerance","display_name":"cold tolerance","score":0.6370000243186951},{"id":"https://openalex.org/keywords/cbf-transcription-factors","display_name":"CBF transcription factors","score":0.8790000081062317},{"id":"https://openalex.org/keywords/unigenes","display_name":"unigenes","score":0.6240000128746033},{"id":"https://openalex.org/keywords/gene-regulatory-networks","display_name":"gene regulatory networks","score":0.7940000295639038},{"id":"https://openalex.org/keywords/cis-regulatory-elements","display_name":"cis-regulatory elements","score":0.8320000171661377},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.722000002861023},{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.9779999852180481},{"id":"https://openalex.org/keywords/freeze-tolerance","display_name":"freezing tolerance","score":0.7089999914169312},{"id":"https://openalex.org/keywords/chilling-sensitivity","display_name":"chilling sensitivity","score":0.5479999780654907},{"id":"https://openalex.org/keywords/hormone-signaling","display_name":"hormone signaling","score":0.5830000042915344},{"id":"https://openalex.org/keywords/tilling-population","display_name":"TILLING population","score":0.8349999785423279},{"id":"https://openalex.org/keywords/mutation-frequency","display_name":"mutation frequency","score":0.7620000243186951},{"id":"https://openalex.org/keywords/lignin-biosynthesis","display_name":"lignin biosynthesis","score":0.9129999876022339},{"id":"https://openalex.org/keywords/beta-glucan-synthase","display_name":"beta-glucan synthase","score":0.8420000076293945},{"id":"https://openalex.org/keywords/comparative-transcriptomics","display_name":"comparative transcriptomics","score":0.5849999785423279}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.469022661447525},{"id":"https://openalex.org/C119406331","wikidata":"https://www.wikidata.org/wiki/Q419763","display_name":"Acclimatization","level":2,"score":0.43116357922554016},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.22257336974143982}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:gupea.ub.gu.se:2077/19495","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/2077/19495","pdf_url":"http://hdl.handle.net/2077/19495","source":{"id":"https://openalex.org/S4306401168","display_name":"Gothenburg University Publications Electronic Archive (Gothenburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I881427289","host_organization_name":"University of Gothenburg","host_organization_lineage":["https://openalex.org/I881427289"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Doctoral thesis"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.335.9396","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.335.9396","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://gupea.ub.gu.se//bitstream/2077/19495/1/gupea_2077_19495_1.pdf","raw_type":"text"},{"id":"mag:1561041196","doi":null,"is_oa":false,"landing_page_url":"https://gupea.ub.gu.se/handle/2077/19495","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:gupea.ub.gu.se:2077/19495","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/2077/19495","pdf_url":"http://hdl.handle.net/2077/19495","source":{"id":"https://openalex.org/S4306401168","display_name":"Gothenburg University Publications Electronic Archive (Gothenburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I881427289","host_organization_name":"University of Gothenburg","host_organization_lineage":["https://openalex.org/I881427289"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Doctoral thesis"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.6875}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1561041196.pdf","grobid_xml":"https://content.openalex.org/works/W1561041196.grobid-xml"},"referenced_works_count":96,"referenced_works":["https://openalex.org/W597145083","https://openalex.org/W1493806833","https://openalex.org/W1528621917","https://openalex.org/W1845342315","https://openalex.org/W1918775481","https://openalex.org/W1924944684","https://openalex.org/W1933383348","https://openalex.org/W1963580111","https://openalex.org/W1965517336","https://openalex.org/W1968222640","https://openalex.org/W1969284236","https://openalex.org/W1969785990","https://openalex.org/W1970156673","https://openalex.org/W1971192644","https://openalex.org/W1971893898","https://openalex.org/W1973741574","https://openalex.org/W1978289851","https://openalex.org/W1979966076","https://openalex.org/W1983729367","https://openalex.org/W1984268662","https://openalex.org/W1992108607","https://openalex.org/W1994807680","https://openalex.org/W1999351612","https://openalex.org/W2001957500","https://openalex.org/W2003595386","https://openalex.org/W2009043520","https://openalex.org/W2013892862","https://openalex.org/W2017472434","https://openalex.org/W2018829893","https://openalex.org/W2019812428","https://openalex.org/W2021681068","https://openalex.org/W2027314634","https://openalex.org/W2027641855","https://openalex.org/W2027683442","https://openalex.org/W2028463864","https://openalex.org/W2032733531","https://openalex.org/W2035333716","https://openalex.org/W2048118620","https://openalex.org/W2052062475","https://openalex.org/W2053724731","https://openalex.org/W2054262102","https://openalex.org/W2057664258","https://openalex.org/W2059410839","https://openalex.org/W2062477849","https://openalex.org/W2064943475","https://openalex.org/W2065223043","https://openalex.org/W2065547616","https://openalex.org/W2067660931","https://openalex.org/W2081441927","https://openalex.org/W2083722533","https://openalex.org/W2087534532","https://openalex.org/W2088410574","https://openalex.org/W2091006699","https://openalex.org/W2097617359","https://openalex.org/W2100990314","https://openalex.org/W2104955343","https://openalex.org/W2108818769","https://openalex.org/W2111646009","https://openalex.org/W2117954882","https://openalex.org/W2118308002","https://openalex.org/W2119239312","https://openalex.org/W2119309805","https://openalex.org/W2121818799","https://openalex.org/W2122394514","https://openalex.org/W2125508747","https://openalex.org/W2129308725","https://openalex.org/W2129458339","https://openalex.org/W2129460507","https://openalex.org/W2131780511","https://openalex.org/W2134626138","https://openalex.org/W2137981728","https://openalex.org/W2138345421","https://openalex.org/W2139135429","https://openalex.org/W2139328007","https://openalex.org/W2139377382","https://openalex.org/W2139977547","https://openalex.org/W2141885858","https://openalex.org/W2142269897","https://openalex.org/W2146018911","https://openalex.org/W2146778293","https://openalex.org/W2149093557","https://openalex.org/W2149211901","https://openalex.org/W2153775758","https://openalex.org/W2154528924","https://openalex.org/W2158714788","https://openalex.org/W2158810446","https://openalex.org/W2160133422","https://openalex.org/W2161174151","https://openalex.org/W2163039945","https://openalex.org/W2166491951","https://openalex.org/W2167911110","https://openalex.org/W2168023061","https://openalex.org/W2170335659","https://openalex.org/W2170976761","https://openalex.org/W2171012097","https://openalex.org/W4250132333"],"related_works":["https://openalex.org/W1571579346","https://openalex.org/W2122394514","https://openalex.org/W1558682003","https://openalex.org/W2164495529","https://openalex.org/W125749942","https://openalex.org/W7099398519","https://openalex.org/W7026565101","https://openalex.org/W7100593607","https://openalex.org/W2111646009","https://openalex.org/W126398810"],"abstract_inverted_index":{"Cold":[0],"acclimation":[1,49,128,167],"protects":[2],"plants":[3],"from":[4,10,78,83,88,152],"temperate":[5],"regions":[6],"of":[7,14,24,46,59,101,213,216,292,299,347],"the":[8,11,47,55,67,165,197,211,214,272,289,304,313,317,338],"world":[9],"deleterious":[12],"effects":[13],"low":[15,192],"and":[16,27,34,51,129,157,171,176,189,203,307,341,362],"freezing":[17,204,235],"temperatures.":[18],"This":[19,326,350],"is":[20,41,266,331],"through":[21],"a":[22,79,98,122,146,183,279],"series":[23],"transcriptional,":[25],"regulatory":[26,124,142],"metabolic":[28],"changes":[29],"that":[30,210,328],"enable":[31],"continued":[32],"growth":[33],"survival.":[35],"The":[36,117,160],"focus":[37],"in":[38,114,130,169,223,226,238,243,257,288,303,316,365],"this":[39],"thesis":[40],"to":[42,57,107,111,195,220,254,268,271,319],"increase":[43],"our":[44,131],"understanding":[45],"cold":[48,60,89,115,127,166,269],"process":[50,168],"there":[52],"by":[53,73],"open":[54],"door":[56],"development":[58],"hardy":[61],"oat":[62,76,91,137,290],"(Avena":[63],"sativa)":[64],"varieties":[65],"for":[66,359],"Nordic":[68],"climate":[69],"conditions.":[70],"We":[71,180],"started":[72],"sequencing":[74,298],"9,792":[75],"ESTs":[77],"cDNA":[80],"library":[81],"prepared":[82],"pooled":[84],"total":[85],"RNA":[86],"extracted":[87],"induced":[90],"plants.":[92,206],"These":[93],"sequences":[94,156],"were":[95,209],"assembled":[96],"into":[97],"UniGene":[99,132],"ser":[100],"2,800":[102],"sequences,":[103],"398":[104],"displayed":[105],"homology":[106],"genes":[108,218,231,301],"previously":[109],"reported":[110],"be":[112,221,255,320,355],"involved":[113,302],"acclimation.":[116],"CBF":[118,138],"factor":[119],"family":[120],"have":[121],"key":[123,217],"role":[125],"during":[126,191],"set":[133],"we":[134,144,277,311],"found":[135],"four":[136],"sequences.":[139],"\\nTo":[140],"infer":[141],"networks":[143],"developed":[145,278],"rule-based":[147],"method,":[148],"which":[149],"combined":[150],"data":[151],"microarrays":[153],"with":[154,234],"promoter":[155],"known":[158,175],"cis\u00ac-elements.":[159],"method":[161],"was":[162],"tested":[163],"on":[164],"Arabidopsis":[170,190,224,239],"could":[172],"indentify":[173],"both":[174,360],"novel":[177],"network":[178],"connections.":[179],"also":[181],"performed":[182],"comparative":[184],"transcriptome":[185],"study":[186],"between":[187,200],"rice":[188,244,265],"temperature":[193],"stress":[194,249],"explore":[196],"molecular":[198],"differences":[199],"chilling":[201],"sensitive":[202],"tolerant":[205],"Interesting":[207],"observations":[208,261],"dynamics":[212],"response":[215],"appears":[219],"higher":[222],"than":[225],"rice.":[227,258],"Several":[228],"important":[229,246,357],"downstream":[230],"encoding":[232],"proteins":[233],"protective":[236],"activities":[237],"are":[240],"not":[241],"present":[242],"or":[245],"cis-elements.":[247],"Also":[248],"mediated":[250],"hormone":[251],"signalling":[252],"seem":[253],"absent":[256],"Together":[259],"these":[260],"partly":[262],"explain":[263],"why":[264],"unable":[267],"acclimate":[270],"same":[273],"extent":[274],"as":[275],"Arabidopsis.\\nFinally":[276],"TILLING":[280,351],"(Targeting":[281],"Induced":[282],"Local":[283],"Lesions":[284],"IN":[285],"Genomes)":[286],"population":[287,318,340,352],"consisting":[291],"2,600":[293],"independent":[294],"events.":[295],"By":[296],"random":[297],"two":[300],"lignin":[305],"(AsPAL1)":[306],"\u00df-glucan":[308],"(AsClsF6)":[309],"synthesis":[310],"estimated":[312],"mutation":[314],"frequency":[315],"approximately":[321],"1":[322],"per":[323],"26,000":[324],"bp.":[325],"means":[327],"each":[329],"gene":[330,345],"mutated":[332],"ca":[333],"250":[334],"times":[335],"looking":[336],"at":[337],"entire":[339],"assuming":[342],"an":[343,356],"average":[344],"size":[346],"2":[348],"kb.":[349],"will":[353],"now":[354],"tool":[358],"breeding":[361],"genetic":[363],"studies":[364],"oats.":[366]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-09-26T08:19:03.415552","created_date":"2016-06-24T00:00:00"}
