{"id":"https://openalex.org/W153074188","doi":null,"title":"Numerical Solution Methods in Stochastic Chemical Kinetics","display_name":"Numerical Solution Methods in Stochastic Chemical Kinetics","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W153074188","mag":"153074188"},"language":"en","primary_location":{"id":"pmh:oai:DiVA.org:uu-9342","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-9342","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-9342","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019497989","display_name":"Stefan Engblom","orcid":"https://orcid.org/0000-0002-3614-1732","observed_orcids":["https://orcid.org/0000-0002-3614-1732"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Stefan Engblom","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-3614-1732","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5019497989"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.486299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.486299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11513","display_name":"stochastic dynamics and bifurcation","score":0.1818999946117401,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11152","display_name":"Stochastic processes and statistical mechanics","score":0.0681999996304512,"subfield":{"id":"https://openalex.org/subfields/2610","display_name":"Mathematical Physics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stochastic-chemical-kinetics","display_name":"stochastic chemical kinetics","score":0.9929999709129333},{"id":"https://openalex.org/keywords/moment-closure","display_name":"moment closure","score":0.5759999752044678},{"id":"https://openalex.org/keywords/stochastic-reaction-diffusion-model","display_name":"stochastic reaction-diffusion model","score":0.859000027179718},{"id":"https://openalex.org/keywords/unstructured-meshes","display_name":"unstructured grid","score":0.9599999785423279},{"id":"https://openalex.org/keywords/numerical-methods","display_name":"numerical methods","score":0.4699999988079071}],"concepts":[{"id":"https://openalex.org/C148898269","wikidata":"https://www.wikidata.org/wiki/Q1108792","display_name":"Kinetics","level":2,"score":0.5381608009338379},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.37894847989082336},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.3763827085494995},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16605785489082336},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:DiVA.org:uu-9342","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-9342","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},{"id":"mag:153074188","doi":null,"is_oa":false,"landing_page_url":"http://uu.diva-portal.org/smash/get/diva2:172728/FULLTEXT01.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:DiVA.org:uu-9342","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-9342","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":79,"referenced_works":["https://openalex.org/W11463020","https://openalex.org/W73460418","https://openalex.org/W74971858","https://openalex.org/W192135459","https://openalex.org/W562332459","https://openalex.org/W1484033701","https://openalex.org/W1509581155","https://openalex.org/W1542018504","https://openalex.org/W1550478503","https://openalex.org/W1554532768","https://openalex.org/W1575619134","https://openalex.org/W1591798773","https://openalex.org/W1971364627","https://openalex.org/W1973109523","https://openalex.org/W1973890190","https://openalex.org/W1978408051","https://openalex.org/W1980269662","https://openalex.org/W1981231043","https://openalex.org/W1982903250","https://openalex.org/W1984617123","https://openalex.org/W1991263093","https://openalex.org/W1992487208","https://openalex.org/W2002083262","https://openalex.org/W2008206597","https://openalex.org/W2012639038","https://openalex.org/W2014582000","https://openalex.org/W2015809403","https://openalex.org/W2017032949","https://openalex.org/W2018158102","https://openalex.org/W2018670096","https://openalex.org/W2019768978","https://openalex.org/W2020335459","https://openalex.org/W2027491117","https://openalex.org/W2034252449","https://openalex.org/W2038410694","https://openalex.org/W2040941336","https://openalex.org/W2042321087","https://openalex.org/W2044859335","https://openalex.org/W2048634371","https://openalex.org/W2062298321","https://openalex.org/W2066594542","https://openalex.org/W2072077152","https://openalex.org/W2072822008","https://openalex.org/W2074401358","https://openalex.org/W2074681199","https://openalex.org/W2078734278","https://openalex.org/W2084924279","https://openalex.org/W2085061065","https://openalex.org/W2087760732","https://openalex.org/W2090107577","https://openalex.org/W2094382091","https://openalex.org/W2095921114","https://openalex.org/W2102787760","https://openalex.org/W2105518356","https://openalex.org/W2105970221","https://openalex.org/W2106369307","https://openalex.org/W2114721611","https://openalex.org/W2115150990","https://openalex.org/W2116583079","https://openalex.org/W2116994683","https://openalex.org/W2117869170","https://openalex.org/W2121777611","https://openalex.org/W2126794261","https://openalex.org/W2127535453","https://openalex.org/W2132898564","https://openalex.org/W2134759932","https://openalex.org/W2135734223","https://openalex.org/W2138261199","https://openalex.org/W2139468632","https://openalex.org/W2141436719","https://openalex.org/W2153901189","https://openalex.org/W2161279434","https://openalex.org/W2165526493","https://openalex.org/W2169509065","https://openalex.org/W2170697535","https://openalex.org/W2576343906","https://openalex.org/W2915382320","https://openalex.org/W3097995899","https://openalex.org/W3098041616"],"related_works":["https://openalex.org/W7100448185","https://openalex.org/W2018593441","https://openalex.org/W2124924107","https://openalex.org/W2042321087","https://openalex.org/W4376115712","https://openalex.org/W2914657132","https://openalex.org/W2150901652","https://openalex.org/W7099748477","https://openalex.org/W149876693","https://openalex.org/W2002083262"],"abstract_inverted_index":{"This":[0],"study":[1],"is":[2,80,86,132,138,156,184,189,208,213,261],"concerned":[3],"with":[4],"the":[5,76,95,101,119,129,134,165,196,200,229,242,254],"numerical":[6,59,258],"solution":[7,197,259],"of":[8,12,44,54,94,100,114,125,171,195,231],"certain":[9,115],"stochastic":[10,147,181,233,244],"models":[11,234,245],"chemical":[13],"reactions.":[14],"Such":[15],"descriptions":[16],"have":[17],"been":[18],"shown":[19,158],"to":[20,37,61,75,143,160],"be":[21],"useful":[22],"tools":[23],"when":[24],"studying":[25],"biochemical":[26],"processes":[27],"inside":[28],"living":[29],"cells":[30],"where":[31,128],"classical":[32],"deterministic":[33,201],"rate":[34],"equations":[35],"fail":[36],"reproduce":[38],"actual":[39,243],"behavior.":[40],"The":[41,103],"main":[42],"contribution":[43,124],"this":[45,126,219],"thesis":[46],"lies":[47],"in":[48,215,218,235,249,257],"its":[49],"theoretical":[50],"and":[51,186,263],"practical":[52],"investigation":[53],"different":[55],"methods":[56,260],"for":[57,89,141],"obtaining":[58,90],"solutions":[60],"such":[62],"descriptions.":[63],"In":[64,175,238],"a":[65,68,91,110,139,145,172,176,179,205,239,250],"preliminary":[66],"study,":[67,127,178],"simple":[69],"but":[70],"often":[71],"quite":[72],"effective":[73],"approach":[74],"moment":[77],"closure":[78],"problem":[79],"examined.":[81],"A":[82],"more":[83],"advanced":[84],"program":[85],"then":[87],"developed":[88,214,248],"consistent":[92,146],"representation":[93,113],"high":[96],"dimensional":[97],"probability":[98],"density":[99],"solution.":[102],"proposed":[104],"method":[105],"gains":[106],"efficiency":[107],"by":[108,168,192],"utilizing":[109],"rapidly":[111],"converging":[112],"functions":[116],"defined":[117],"over":[118,150],"semi-infinite":[120],"integer":[121],"lattice.":[122],"Another":[123],"focus":[130],"instead":[131],"on":[133,224],"spatially":[135],"distributed":[136],"case,":[137],"suggestion":[140],"how":[142,159],"obtain":[144],"reaction-diffusion":[148],"model":[149,167],"an":[151,225],"unstructured":[152],"grid.":[153],"Here":[154],"it":[155],"also":[157],"efficiently":[161],"collect":[162],"samples":[163],"from":[164],"resulting":[166],"making":[169],"use":[170],"hybrid":[173],"method.":[174],"final":[177],"time-parallel":[180],"simulation":[182],"algorithm":[183],"suggested":[185],"analyzed.":[187],"Efficiency":[188],"here":[190],"achieved":[191],"moving":[193],"parts":[194],"phase":[198],"into":[199],"regime":[202],"given":[203],"that":[204],"parallel":[206],"architecture":[207],"available.":[209],"Necessary":[210],"background":[211],"material":[212],"three":[216],"chapters":[217],"summary.":[220],"An":[221],"introductory":[222],"chapter":[223,241],"accessible":[226],"level":[227],"motivates":[228],"purpose":[230],"considering":[232],"applied":[236],"physics.":[237],"second":[240],"considered":[246],"are":[247],"multi-faceted":[251],"way.":[252],"Finally,":[253],"current":[255],"state-of-the-art":[256],"summarized":[262],"commented":[264],"upon.":[265]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-10-12T09:40:04.860316","created_date":"2016-06-24T00:00:00"}