{"id":"https://openalex.org/W1485878985","doi":null,"title":"DNA meets the SVD","display_name":"DNA meets the SVD","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1485878985","mag":"1485878985"},"language":"en","primary_location":{"id":"pmh:oai:CiteSeerX.psu:10.1.1.108.6138","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.108.6138","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.bath.ac.uk/math-sci/BICS/preprints/BICS07_P1.pdf","raw_type":"text"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065778060","display_name":"Peter Grindrod","orcid":"https://orcid.org/0000-0003-0924-7010","observed_orcids":["https://orcid.org/0000-0003-0924-7010"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peter Grindrod","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-0924-7010","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058486589","display_name":"Desmond John Higham","orcid":"https://orcid.org/0000-0002-6635-3461","observed_orcids":["https://orcid.org/0000-0002-6635-3461"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Desmond J. Higham","raw_affiliation_strings":["Mathematics And Statistics"],"raw_orcid":"https://orcid.org/0000-0002-6635-3461","affiliations":[{"raw_affiliation_string":"Mathematics And Statistics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014993559","display_name":"Gabriela Kalna","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gabriela Kalna","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109036531","display_name":"A. Michael Spence","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Michael Spence","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056628959","display_name":"Zhivko Stoyanov","orcid":"https://orcid.org/0000-0001-9065-6334","observed_orcids":["https://orcid.org/0000-0001-9065-6334"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhivko Stoyanov","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9065-6334","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5090426044","display_name":"J. Keith Vass","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Keith Vass","raw_affiliation_strings":["Mathematics And Statistics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mathematics And Statistics","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"44","issue":null,"first_page":"80","last_page":"85"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/singular-value-decomposition","display_name":"singular value decomposition","score":0.9760000109672546},{"id":"https://openalex.org/keywords/computational-cell-biology","display_name":"computational cell biology","score":0.7369999885559082},{"id":"https://openalex.org/keywords/genomic-data-analysis","display_name":"genomic data analysis","score":0.6290000081062317},{"id":"https://openalex.org/keywords/microarray-gene-expression","display_name":"microarray gene expression","score":0.6690000295639038},{"id":"https://openalex.org/keywords/linear-algebra","display_name":"linear algebra","score":0.5419999957084656},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.5070000290870667},{"id":"https://openalex.org/keywords/mrna","display_name":"mRNA","score":0.6069999933242798},{"id":"https://openalex.org/keywords/protein-production","display_name":"protein production","score":0.4180000126361847},{"id":"https://openalex.org/keywords/high-throughput-genomics","display_name":"high-throughput genomics","score":0.6600000262260437}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5573778748512268},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5434629321098328},{"id":"https://openalex.org/C139352143","wikidata":"https://www.wikidata.org/wiki/Q82571","display_name":"Linear algebra","level":2,"score":0.43441256880760193},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35446691513061523},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3383973240852356},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3110693097114563},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:CiteSeerX.psu:10.1.1.108.6138","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.108.6138","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.bath.ac.uk/math-sci/BICS/preprints/BICS07_P1.pdf","raw_type":"text"},{"id":"mag:1485878985","doi":null,"is_oa":false,"landing_page_url":"https://pure.strath.ac.uk/portal/files/64385760/strathprints015052.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W12513439","https://openalex.org/W250209774","https://openalex.org/W391578156","https://openalex.org/W1966293078","https://openalex.org/W1974640858","https://openalex.org/W1975975525","https://openalex.org/W1980672287","https://openalex.org/W2039934205","https://openalex.org/W2065304353","https://openalex.org/W2080182143","https://openalex.org/W2101750553","https://openalex.org/W2107158503","https://openalex.org/W2109363337","https://openalex.org/W2111174249","https://openalex.org/W2117116259","https://openalex.org/W2118070789","https://openalex.org/W2129256542","https://openalex.org/W2135601080","https://openalex.org/W2135624629","https://openalex.org/W2139807849","https://openalex.org/W2152698810","https://openalex.org/W2157076884","https://openalex.org/W2600151856"],"related_works":["https://openalex.org/W7100019143","https://openalex.org/W2413157582","https://openalex.org/W7100799027","https://openalex.org/W2238440793","https://openalex.org/W7100450008","https://openalex.org/W2099388546","https://openalex.org/W4214737891","https://openalex.org/W3211285714","https://openalex.org/W90658192","https://openalex.org/W7095072526"],"abstract_inverted_index":{"This":[0],"paper":[1],"introduces":[2],"an":[3],"important":[4,151],"area":[5],"of":[6,26,39,63,98,111,131,143,146,168],"computational":[7],"cell":[8],"biology":[9],"where":[10],"complex,":[11],"publicly":[12],"available":[13],"genomic":[14],"data":[15],"is":[16],"being":[17],"examined":[18],"by":[19],"linear":[20],"algebra":[21],"methods,":[22],"with":[23],"the":[24,37,69,109,129,144,147,153,166],"aim":[25],"revealing":[27],"biological":[28,51,58],"and":[29,88,163],"medical":[30],"insights.":[31],"Section":[32],"1:":[33],"What\u2019s":[34],"New?":[35],"Since":[36],"time":[38],"Gregor":[40],"Mendel,":[41],"biologists":[42],"have":[43],"been":[44],"attempting":[45],"to":[46,72,78,121,160],"understand":[47],"how":[48],"genes":[49,55,134,149],"determine":[50],"properties.":[52],"Differences":[53],"in":[54,61],"largely":[56],"explain":[57],"diversity.":[59],"But":[60],"spite":[62],"this":[64,127],"all":[65,94,132,169],"humans":[66],"are":[67,150,165,177],"recognisably":[68],"same":[70],"due":[71],"our":[73],"control":[74],"systems":[75],"that":[76,155],"respond":[77],"driving":[79],"forces":[80],"such":[81],"as":[82],"feeding,":[83],"stress,":[84],"infection,":[85],"age,":[86],"sex":[87],"environment.":[89],"These":[90],"controls":[91],"operate":[92],"at":[93],"possible":[95],"levels,":[96],"many":[97],"which":[99],"can":[100,135],"now":[101],"be":[102,136],"studied":[103],"using":[104],"high-throughput":[105],"technology.":[106],"Microarrays":[107],"observe":[108],"transfer":[110],"information":[112],"from":[113],"deoxyribonucleic":[114],"acid":[115,124],"(DNA),":[116],"containing":[117],"around":[118],"30,000":[119],"genes,":[120],"messenger":[122],"ribonucleic":[123],"(mRNA).":[125],"In":[126,141],"way":[128],"state":[130],"these":[133],"recorded":[137],"for":[138],"individual":[139],"samples.":[140],"terms":[142],"functioning":[145],"cell,":[148],"because":[152],"mRNA":[154,175],"they":[156],"create":[157],"goes":[158],"on":[159],"produce":[161],"proteins,":[162],"proteins":[164],"catalysts":[167],"cells":[170],"\u2019":[171],"activities.":[172],"Maybe":[173],"20,000":[174],"signals":[176]},"counts_by_year":[{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
