{"id":"https://openalex.org/W1480167569","doi":"https://doi.org/10.1109/scc.2004.1358001","title":"Integrating text mining into distributed bioinformatics workflows: a web services implementation","display_name":"Integrating text mining into distributed bioinformatics workflows: a web services implementation","publication_year":2004,"publication_date":"2004-12-23","ids":{"openalex":"https://openalex.org/W1480167569","doi":"https://doi.org/10.1109/scc.2004.1358001","mag":"1480167569"},"language":"en","primary_location":{"id":"doi:10.1109/scc.2004.1358001","doi":"https://doi.org/10.1109/scc.2004.1358001","is_oa":false,"landing_page_url":"https://doi.org/10.1109/scc.2004.1358001","pdf_url":null,"source":{"id":"https://openalex.org/S4306418716","display_name":"IEEE International Conference on Services Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE International Conference onServices Computing, 2004. (SCC 2004). Proceedings. 2004","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040587162","display_name":"Robert Gaizauskas","orcid":"https://orcid.org/0000-0002-3356-5126","observed_orcids":["https://orcid.org/0000-0002-3356-5126"]},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"R. Gaizauskas","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, UK","Dept. of Comput. Sci., Univ. of Sheffield, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. of Sheffield, UK#TAB#","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083477994","display_name":"Neil Davis","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"N. Davis","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, UK","Dept. of Comput. Sci., Univ. of Sheffield, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. of Sheffield, UK#TAB#","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047947755","display_name":"George C. Demetriou","orcid":"https://orcid.org/0000-0002-1766-1652","observed_orcids":["https://orcid.org/0000-0002-1766-1652"]},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"G. Demetriou","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, UK","Dept. of Comput. Sci., Univ. of Sheffield, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. of Sheffield, UK#TAB#","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100817071","display_name":"Yikun Guo","orcid":"https://orcid.org/0000-0002-1462-5330","observed_orcids":["https://orcid.org/0000-0002-1462-5330"]},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yikun Guo","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051815961","display_name":"Ian G. Roberts","orcid":"https://orcid.org/0000-0002-7296-5851","observed_orcids":["https://orcid.org/0000-0002-7296-5851"]},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"I. Roberts","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, UK","Dept. of Comput. Sci., Univ. of Sheffield, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. of Sheffield, UK#TAB#","institution_ids":["https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I91136226"],"apc_list":null,"apc_paid":null,"fwci":1.3956,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86239782,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"13","issue":null,"first_page":"145","last_page":"152"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8306000232696533,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8306000232696533,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.13729999959468842,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.009999999776482582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/text-mining","display_name":"text mining","score":0.8339999914169312},{"id":"https://openalex.org/keywords/scientific-workflows","display_name":"scientific workflows","score":0.9359999895095825},{"id":"https://openalex.org/keywords/web-services","display_name":"web services","score":0.9309999942779541},{"id":"https://openalex.org/keywords/literature-search","display_name":"literature searching","score":0.49900001287460327},{"id":"https://openalex.org/keywords/graves-disease","display_name":"Graves' disease","score":0.7770000100135803},{"id":"https://openalex.org/keywords/williams-syndrome","display_name":"Williams syndrome","score":1.0},{"id":"https://openalex.org/keywords/genetic-basis-of-disease","display_name":"genetic basis of disease","score":0.7940000295639038}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.9277638792991638},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7604693174362183},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5867955088615417},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5665375590324402},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5652647614479065},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5478208065032959},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5331534743309021},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.44993215799331665},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12868201732635498},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/scc.2004.1358001","doi":"https://doi.org/10.1109/scc.2004.1358001","is_oa":false,"landing_page_url":"https://doi.org/10.1109/scc.2004.1358001","pdf_url":null,"source":{"id":"https://openalex.org/S4306418716","display_name":"IEEE International Conference on Services Computing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE International Conference onServices Computing, 2004. (SCC 2004). Proceedings. 2004","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.699.1350","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.699.1350","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://staffwww.dcs.shef.ac.uk/people/R.Gaizauskas/research/papers/scc04.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W181129018","https://openalex.org/W1524045564","https://openalex.org/W1660390307","https://openalex.org/W1740014302","https://openalex.org/W2033319677","https://openalex.org/W2034953016","https://openalex.org/W2055043387","https://openalex.org/W2107523227","https://openalex.org/W2121940249"],"related_works":["https://openalex.org/W7098924201","https://openalex.org/W2013434113","https://openalex.org/W2000729083","https://openalex.org/W3170973029","https://openalex.org/W2158022644","https://openalex.org/W3186932907","https://openalex.org/W2008676731","https://openalex.org/W7098443262","https://openalex.org/W4237802362","https://openalex.org/W2052905324"],"abstract_inverted_index":{"Workflows":[0],"are":[1,30,41],"useful":[2,22],"ways":[3],"to":[4,103,129],"support":[5,104,130],"scientific":[6,51,80,106],"researchers":[7,132],"in":[8,67,73,78,87,101,127],"carrying":[9],"out":[10],"repetitive":[11],"analytical":[12],"tasks":[13],"on":[14,56],"digital":[15],"information.":[16],"Web":[17,120],"services":[18,121],"can":[19,85,123],"provide":[20],"a":[21,99],"implementation":[23],"mechanism":[24],"for":[25],"workflows,":[26,116],"particularly":[27],"when":[28],"they":[29],"distributed,":[31],"i.e.,":[32],"where":[33],"some":[34],"of":[35,63,70,98,137],"the":[36,44,47,68,74,79,93,105,134],"data":[37],"or":[38,58],"processing":[39],"resources":[40],"remote":[42],"from":[43],"scientist":[45],"initiating":[46],"workflow.":[48],"While":[49],"many":[50],"workflows":[52],"primarily":[53],"involve":[54],"operations":[55],"structured":[57],"numerical":[59],"data,":[60],"all":[61],"interpretation":[62],"results":[64],"is":[65],"done":[66],"context":[69],"related":[71],"work":[72],"field,":[75],"as":[76,96],"reflected":[77],"literature.":[81],"Text":[82],"mining":[83],"technology":[84],"assist":[86],"automatically":[88],"building":[89],"helpful":[90],"pathways":[91],"into":[92],"relevant":[94],"literature":[95],"part":[97],"workflow":[100],"order":[102,128],"discovery":[107],"process.":[108],"We":[109],"demonstrate":[110],"how":[111],"these":[112],"three":[113],"technologies":[114],"-":[115,122,141],"text":[117],"mining,":[118],"and":[119,144],"be":[124],"fruitfully":[125],"combined":[126],"bioinformatics":[131],"investigating":[133],"genetic":[135],"basis":[136],"two":[138],"physiological":[139],"disorders":[140],"Graves'":[142],"disease":[143],"Williams":[145],"syndrome.":[146]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-17T09:40:24.721904","created_date":"2016-06-24T00:00:00"}