{"id":"https://openalex.org/W142724965","doi":null,"title":"Review of Genome Sequence Short Read Error Correction Algorithms","display_name":"Review of Genome Sequence Short Read Error Correction Algorithms","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W142724965","mag":"142724965"},"language":"en","primary_location":{"id":"mag:142724965","doi":null,"is_oa":false,"landing_page_url":"http://article.sapub.org/pdf/10.5923.j.bioinformatics.20130301.01.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4210224639","display_name":"American Journal of Bioinformatics Research","issn_l":"2167-6976","issn":["2167-6976","2167-6992"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"American Journal of Bioinformatics Research","raw_type":null},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060347077","display_name":"Muhammad Tahir","orcid":"https://orcid.org/0000-0002-7750-8959","observed_orcids":["https://orcid.org/0000-0002-7750-8959"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Muhammad Tahir","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-7750-8959","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066472711","display_name":"Muhammad Sardaraz","orcid":"https://orcid.org/0000-0002-7169-8683","observed_orcids":["https://orcid.org/0000-0002-7169-8683"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Muhammad Sardaraz","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-7169-8683","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108718360","display_name":"Ataul Aziz Ikram","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ataul Aziz Ikram","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5070541130","display_name":"Hassan Bajwa","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hassan Bajwa","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5499,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.59918835,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":96},"biblio":{"volume":"3","issue":"1","first_page":"1","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-sequencing","display_name":"genome sequencing","score":0.7310000061988831},{"id":"https://openalex.org/keywords/next-generation-sequencing","display_name":"next-generation sequencing","score":0.75},{"id":"https://openalex.org/keywords/sequencing-errors","display_name":"sequencing errors","score":0.8190000057220459},{"id":"https://openalex.org/keywords/error-correction-algorithm","display_name":"error correction algorithm","score":0.8650000095367432},{"id":"https://openalex.org/keywords/bioinformatics-software","display_name":"bioinformatics software","score":0.6489999890327454},{"id":"https://openalex.org/keywords/algorithm-performance-evaluation","display_name":"algorithm performance evaluation","score":0.38600000739097595}],"concepts":[{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.7036101222038269},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6297445893287659},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.6078259348869324},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.5239712595939636},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5078125596046448},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5039889216423035},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4519484043121338},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4227166175842285},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.42160624265670776},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.41650065779685974},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38121551275253296},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1859896183013916},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12054824829101562},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11468824744224548},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.11088484525680542},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08423003554344177},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.07157173752784729},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:142724965","doi":null,"is_oa":false,"landing_page_url":"http://article.sapub.org/pdf/10.5923.j.bioinformatics.20130301.01.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4210224639","display_name":"American Journal of Bioinformatics Research","issn_l":"2167-6976","issn":["2167-6976","2167-6992"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"American Journal of Bioinformatics Research","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W114037093","https://openalex.org/W301824129","https://openalex.org/W1635391495","https://openalex.org/W1966822396","https://openalex.org/W1980032728","https://openalex.org/W1984021931","https://openalex.org/W2012016911","https://openalex.org/W2020181708","https://openalex.org/W2046594687","https://openalex.org/W2054226908","https://openalex.org/W2059529172","https://openalex.org/W2061680337","https://openalex.org/W2073163969","https://openalex.org/W2078370799","https://openalex.org/W2093931624","https://openalex.org/W2097341408","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2112113834","https://openalex.org/W2113528688","https://openalex.org/W2113649367","https://openalex.org/W2118335502","https://openalex.org/W2119745866","https://openalex.org/W2122270655","https://openalex.org/W2122812051","https://openalex.org/W2124985265","https://openalex.org/W2127226151","https://openalex.org/W2133956160","https://openalex.org/W2135196291","https://openalex.org/W2136651963","https://openalex.org/W2138270253","https://openalex.org/W2140154634","https://openalex.org/W2141978878","https://openalex.org/W2142619120","https://openalex.org/W2142702487","https://openalex.org/W2142749416","https://openalex.org/W2143325524","https://openalex.org/W2144662851","https://openalex.org/W2151017710","https://openalex.org/W2152073175","https://openalex.org/W2152246890","https://openalex.org/W2155845142","https://openalex.org/W2159998739","https://openalex.org/W2160265768","https://openalex.org/W2160665949","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2171475724","https://openalex.org/W2173213060","https://openalex.org/W7096157630","https://openalex.org/W7097369121","https://openalex.org/W7098817570","https://openalex.org/W7140259548"],"related_works":["https://openalex.org/W3042689899","https://openalex.org/W2152246890","https://openalex.org/W3115745540","https://openalex.org/W2941316992","https://openalex.org/W2122812051","https://openalex.org/W1980032728","https://openalex.org/W3102365221","https://openalex.org/W2119745866","https://openalex.org/W2189659984","https://openalex.org/W2079135015"],"abstract_inverted_index":{"Ne":[0],"xt":[1],"-generation":[2],"high":[3],"throughput":[4,19],"sequencing":[5,20,41,54],"technologies":[6,21,42],"have":[7],"opened":[8],"up":[9],"a":[10,23,31],"wide":[11],"range":[12],"of":[13,26,81,89,109,123],"new":[14],"genome":[15,95],"research":[16],"opportunities.":[17],"High":[18],"produces":[22],"massive":[24],"amount":[25],"short":[27,39,97],"reads":[28],"data":[29],"in":[30,129],"single":[32],"run.":[33],"The":[34,117],"large":[35,79],"dataset":[36],"produced":[37],"by":[38],"read":[40,98],"are":[43,58,67],"h":[44],"ighly":[45],"error-p":[46],"rone":[47],"as":[48,132],"compared":[49],"to":[50,76],"tradit":[51],"ional":[52],"Sanger":[53],"approaches.":[55],"These":[56],"errors":[57,99],"critical":[59],"and":[60,90,102,111,126],"removing":[61],"them":[62],"is":[63],"challenging.":[64],"Therefore,":[65],"there":[66],"peremptory":[68],"demands":[69],"for":[70,73],"statistical":[71],"tools":[72,101],"bioinformat":[74],"ics":[75],"analyze":[77],"such":[78],"amounts":[80],"data.":[82],"In":[83],"this":[84],"paper,":[85],"we":[86],"present":[87,106,119],"review":[88],"measuring":[91],"parameters":[92],"associated":[93],"with":[94,114],"sequence":[96],"correction":[100],"algorithms.":[103],"We":[104],"further":[105],"comprehensive":[107],"detail":[108],"datasets":[110],"results":[112],"obtained":[113],"defined":[115],"parameters.":[116],"reviews":[118],"the":[120,124,130],"current":[121],"state":[122],"art":[125],"future":[127],"directions":[128],"area":[131],"well.":[133]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
