{"id":"https://openalex.org/W120185594","doi":null,"title":"Dating Divergence Times in Phylogenies","display_name":"Dating Divergence Times in Phylogenies","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W120185594","mag":"120185594"},"language":"en","primary_location":{"id":"pmh:oai:DiVA.org:uu-8155","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-8155","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-8155","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052459811","display_name":"Cajsa Lisa Anderson","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Cajsa Lisa Anderson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5052459811"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.6035000085830688,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.6035000085830688,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.23119999468326569,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.13130000233650208,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/divergence-time-estimation","display_name":"divergence time estimation","score":0.9470000267028809},{"id":"https://openalex.org/keywords/phylogenetic-dating","display_name":"phylogenetic dating","score":0.7239999771118164},{"id":"https://openalex.org/keywords/fossil-calibration","display_name":"fossil calibration","score":0.6859999895095825},{"id":"https://openalex.org/keywords/nonparametric-smoothing","display_name":"nonparametric smoothing","score":0.8220000267028809},{"id":"https://openalex.org/keywords/angiosperm-diversification","display_name":"angiosperm diversification","score":0.9089999794960022},{"id":"https://openalex.org/keywords/cretaceous-paleogene-boundary","display_name":"Cretaceous-Paleogene boundary","score":0.8539999723434448},{"id":"https://openalex.org/keywords/eudicots","display_name":"eudicots","score":0.8349999785423279},{"id":"https://openalex.org/keywords/monocots","display_name":"monocotyledons","score":0.9990000128746033},{"id":"https://openalex.org/keywords/neoaves","display_name":"Neoaves","score":0.953000009059906},{"id":"https://openalex.org/keywords/avian-evolution","display_name":"avian evolution","score":0.515999972820282},{"id":"https://openalex.org/keywords/penalized-likelihood","display_name":"penalized likelihood","score":0.6729999780654907},{"id":"https://openalex.org/keywords/rate-smoothing","display_name":"rate smoothing","score":0.5270000100135803},{"id":"https://openalex.org/keywords/molecular-phylogeny","display_name":"molecular phylogeny","score":0.492000013589859}],"concepts":[{"id":"https://openalex.org/C207390915","wikidata":"https://www.wikidata.org/wiki/Q1230525","display_name":"Divergence (linguistics)","level":2,"score":0.5075627565383911},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4504389464855194},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.3532087802886963},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3483814001083374},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.12162256240844727},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.08406224846839905}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:DiVA.org:uu-8155","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-8155","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},{"id":"mag:120185594","doi":null,"is_oa":false,"landing_page_url":"http://uu.diva-portal.org/smash/get/diva2:170514/FULLTEXT01.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:DiVA.org:uu-8155","doi":null,"is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-8155","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I86987016","host_organization_name":"KTH Royal Institute of Technology","host_organization_lineage":["https://openalex.org/I86987016"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/doctoralThesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W129711797","https://openalex.org/W333018237","https://openalex.org/W575963557","https://openalex.org/W1534406401","https://openalex.org/W1839175840","https://openalex.org/W1907366230","https://openalex.org/W1944637642","https://openalex.org/W1964454133","https://openalex.org/W1964575260","https://openalex.org/W1966957912","https://openalex.org/W1966972227","https://openalex.org/W1976669926","https://openalex.org/W1982848324","https://openalex.org/W1988673718","https://openalex.org/W2002527203","https://openalex.org/W2003894903","https://openalex.org/W2015435207","https://openalex.org/W2024612778","https://openalex.org/W2031585615","https://openalex.org/W2036628186","https://openalex.org/W2037667459","https://openalex.org/W2045517599","https://openalex.org/W2046435207","https://openalex.org/W2051296828","https://openalex.org/W2055771471","https://openalex.org/W2058815839","https://openalex.org/W2070041165","https://openalex.org/W2073813395","https://openalex.org/W2081432226","https://openalex.org/W2082012455","https://openalex.org/W2092626369","https://openalex.org/W2094646746","https://openalex.org/W2094672597","https://openalex.org/W2094939159","https://openalex.org/W2098008528","https://openalex.org/W2106750393","https://openalex.org/W2106924124","https://openalex.org/W2108034499","https://openalex.org/W2108135089","https://openalex.org/W2110131668","https://openalex.org/W2115850793","https://openalex.org/W2121190890","https://openalex.org/W2121734880","https://openalex.org/W2125129601","https://openalex.org/W2130416410","https://openalex.org/W2132228194","https://openalex.org/W2136968713","https://openalex.org/W2139771752","https://openalex.org/W2140633205","https://openalex.org/W2141364009","https://openalex.org/W2143929340","https://openalex.org/W2146058063","https://openalex.org/W2151758790","https://openalex.org/W2159368494","https://openalex.org/W2161444534","https://openalex.org/W2163048979","https://openalex.org/W2165459951","https://openalex.org/W2166152751","https://openalex.org/W2172057351","https://openalex.org/W2235442146","https://openalex.org/W2493938623"],"related_works":["https://openalex.org/W333018237","https://openalex.org/W350397479","https://openalex.org/W340426556","https://openalex.org/W7097320830","https://openalex.org/W2105272987","https://openalex.org/W2108135089","https://openalex.org/W2587225768","https://openalex.org/W6947949247","https://openalex.org/W288278472","https://openalex.org/W2145130427"],"abstract_inverted_index":{"This":[0],"thesis":[1],"concerns":[2],"different":[3],"aspects":[4],"of":[5,21,52,56,72,84,117,127,140,158,164,169,237],"dating":[6,100,191],"divergence":[7,55,83],"times":[8],"in":[9,40,58,76,201,216],"phylogenetic":[10,102],"trees,":[11,103],"using":[12],"molecular":[13],"data":[14],"and":[15,26,34,45,96,151,160,172,177,195,210,234],"multiple":[16,35],"fossil":[17,36,170],"age":[18,165,188,202],"constraints.":[19,166],"Datings":[20],"phylogenetically":[22],"basal":[23],"eudicots,":[24],"monocots":[25,46],"modern":[27],"birds":[28],"(Neoaves)":[29],"are":[30,47,175,193,204,243],"presented.":[31,106],"Large":[32],"phylograms":[33],"constraints":[37,171],"were":[38,74],"used":[39],"all":[41],"these":[42],"studies.":[43],"Eudicots":[44],"suggested":[48,244],"to":[49,136,179,245],"be":[50,180],"part":[51],"a":[53,109,121,133,137],"rapid":[54],"angiosperms":[57],"the":[59,67,77,81,90,125,128,141,144,181,211,217,221,230,235,247],"Early":[60],"Cretaceous,":[61,79],"with":[62],"most":[63,182],"families":[64,86],"present":[65,75],"at":[66,120,229],"Cretaceous/Tertiary":[68],"boundary.":[69,92],"Stem":[70],"lineages":[71],"Neoaves":[73],"Late":[78],"but":[80],"main":[82],"extant":[85],"took":[87],"place":[88],"around":[89],"Cre-taceous/Tertiary":[91],"A":[93],"novel":[94],"method":[95,112,214],"computer":[97],"software":[98],"for":[99,156,185],"large":[101],"PATHd8,":[104,209],"is":[105,108,146,197],"PATHd8":[107],"nonparametric":[110],"smoothing":[111,239],"that":[113,199],"smoothes":[114],"one":[115],"pair":[116],"sister":[118],"groups":[119],"time,":[122],"by":[123],"taking":[124],"mean":[126],"added":[129],"branch":[130],"lengths":[131],"from":[132,206],"terminal":[134],"taxon":[135],"node.":[138],"Because":[139],"local":[142],"smoothing,":[143],"algorithm":[145],"simple,":[147],"hence":[148],"providing":[149],"stable":[150],"very":[152],"fast":[153],"analyses,":[154],"allowing":[155],"thousands":[157],"taxa":[159],"an":[161],"arbitrary":[162],"number":[163],"The":[167],"importance":[168],"their":[173],"placement":[174],"discussed,":[176],"concluded":[178,198],"important":[183],"factor":[184],"obtaining":[186],"reasonable":[187],"estimates.":[189],"Different":[190],"methods":[192],"compared,":[194],"it":[196],"differences":[200],"estimates":[203],"obtained":[205],"penalized":[207],"likelihood,":[208],"Bayesian":[212,222],"autocorrelation":[213],"implemented":[215],"multidivtime":[218],"program.":[219],"In":[220],"method,":[223],"prior":[224],"assumptions":[225],"about":[226],"evolutionary":[227],"rate":[228,232,238],"root,":[231],"variance":[233],"level":[236],"between":[240],"internal":[241],"edges,":[242],"influence":[246],"results.":[248]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}