{"id":"https://openalex.org/W102755097","doi":null,"title":"Extracting actionable findings of appendicitis from radiology reports using natural language processing.","display_name":"Extracting actionable findings of appendicitis from radiology reports using natural language processing.","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W102755097","mag":"102755097","pmid":"https://pubmed.ncbi.nlm.nih.gov/24303268","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3845763"},"language":"en","primary_location":{"id":"pmh:oai:europepmc.org:2834453","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3845763","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://europepmc.org/articles/PMC3845763","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017078976","display_name":"Bryan Rink","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Rink","raw_affiliation_strings":["The University of Texas at Dallas, Richardson, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Texas at Dallas, Richardson, TX, USA","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046709245","display_name":"Kirk E Roberts","orcid":"https://orcid.org/0000-0001-6525-5213","observed_orcids":["https://orcid.org/0000-0001-6525-5213","https://orcid.org/0000-0003-0716-3630"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kirk Roberts","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014682058","display_name":"Sanda M. Harabagiu","orcid":"https://orcid.org/0000-0002-8186-1501","observed_orcids":["https://orcid.org/0000-0002-8186-1501"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sanda Harabagiu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034262562","display_name":"Richard H. Scheuermann","orcid":"https://orcid.org/0000-0003-1355-892X","observed_orcids":["https://orcid.org/0000-0003-1355-892X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Richard H Scheuermann","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080343099","display_name":"Seth M Toomay","orcid":"https://orcid.org/0000-0002-3962-9653","observed_orcids":["https://orcid.org/0000-0002-3962-9653"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Seth Toomay","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014570074","display_name":"Travis G. Browning","orcid":"https://orcid.org/0000-0002-2675-413X","observed_orcids":["https://orcid.org/0000-0002-2675-413X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Travis Browning","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050828693","display_name":"Teresa Bosler","orcid":"https://orcid.org/0000-0002-5520-5674","observed_orcids":["https://orcid.org/0000-0002-5520-5674"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Teresa Bosler","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5048772301","display_name":"Ronald M. Peshock","orcid":"https://orcid.org/0000-0003-3217-1966","observed_orcids":["https://orcid.org/0000-0003-3217-1966"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ronald Peshock","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.348,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.58943089,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"2013","issue":null,"first_page":"221","last_page":"221"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/appendicitis","display_name":"appendicitis","score":0.9940000176429749},{"id":"https://openalex.org/keywords/radiology-reports","display_name":"radiology reports","score":0.9300000071525574},{"id":"https://openalex.org/keywords/actionable-findings","display_name":"actionable findings","score":0.9139999747276306},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"natural language processing","score":0.7749999761581421},{"id":"https://openalex.org/keywords/clinical-text-mining","display_name":"clinical text mining","score":0.4339999854564667},{"id":"https://openalex.org/keywords/automatic-detection","display_name":"automated detection","score":0.32499998807907104}],"concepts":[{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.6983802914619446},{"id":"https://openalex.org/C2780016130","wikidata":"https://www.wikidata.org/wiki/Q121041","display_name":"Appendicitis","level":2,"score":0.6530464887619019},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.567271888256073},{"id":"https://openalex.org/C61434518","wikidata":"https://www.wikidata.org/wiki/Q932510","display_name":"General surgery","level":1,"score":0.14547455310821533}],"mesh":[],"locations_count":5,"locations":[{"id":"pmh:oai:europepmc.org:2834453","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3845763","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3845763","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3845763","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Jt Summits Transl Sci Proc","raw_type":"Text"},{"id":"pmid:24303268","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24303268","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.921.1239","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.921.1239","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://europepmc.org/backend/ptpmcrender.fcgi?accid%3DPMC3845763%26blobtype%3Dpdf","raw_type":"text"},{"id":"mag:102755097","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24303268","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null}],"best_oa_location":{"id":"pmh:oai:europepmc.org:2834453","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3845763","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[{"score":0.8371999859809875,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1483357098","https://openalex.org/W1892731185","https://openalex.org/W2016561466","https://openalex.org/W2095870333","https://openalex.org/W2101891738","https://openalex.org/W2163670493","https://openalex.org/W2242459625"],"related_works":["https://openalex.org/W7011877045","https://openalex.org/W4206443342","https://openalex.org/W184493884","https://openalex.org/W3200849552","https://openalex.org/W4306639554","https://openalex.org/W2563364981","https://openalex.org/W4200629646","https://openalex.org/W1601835763","https://openalex.org/W2469615238","https://openalex.org/W4308408786"],"abstract_inverted_index":{"Radiology":[0],"reports":[1,115],"often":[2],"contain":[3],"findings":[4,19,38,62,81],"about":[5,36],"the":[6,31,44,75,102],"condition":[7],"of":[8,63,77,112,128,132,137],"a":[9,21,57,94,110,126,130],"patient":[10],"which":[11],"should":[12],"be":[13,25],"acted":[14],"upon":[15],"quickly.":[16],"These":[17],"actionable":[18,61],"in":[20,65],"radiology":[22,66,114],"report":[23,95,103],"can":[24],"automatically":[26],"detected":[27],"to":[28,40,43,83,99],"ensure":[29],"that":[30,46,122],"referring":[32],"physician":[33],"is":[34,104],"notified":[35],"such":[37],"and":[39,79,134],"provide":[41],"feedback":[42],"radiologist":[45],"further":[47],"action":[48],"has":[49],"been":[50],"taken.":[51],"In":[52],"this":[53],"paper":[54],"we":[55],"investigate":[56],"method":[58,69],"for":[59],"detecting":[60],"appendicitis":[64,78,84],"reports.":[67],"The":[68],"identifies":[70],"both":[71],"individual":[72,91],"assertions":[73],"regarding":[74],"presence":[76],"other":[80],"related":[82],"using":[85],"syntactic":[86],"dependency":[87],"patterns.":[88],"All":[89],"relevant":[90],"statements":[92],"from":[93],"are":[96],"collectively":[97],"considered":[98],"determine":[100],"whether":[101],"consistent":[105],"with":[106],"appendicitis.":[107],"Evaluation":[108],"on":[109],"corpus":[111],"400":[113],"annotated":[116],"by":[117],"two":[118],"expert":[119],"radiologists":[120],"showed":[121],"our":[123],"approach":[124],"achieves":[125],"precision":[127],"91%,":[129],"recall":[131],"83%,":[133],"an":[135],"F1-measure":[136],"87%.":[138]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2016-06-24T00:00:00"}