{"id":"https://openalex.org/W102458853","doi":null,"title":"Deep sequencing of a plant transcriptome","display_name":"Deep sequencing of a plant transcriptome","publication_year":2012,"publication_date":"2012-03-20","ids":{"openalex":"https://openalex.org/W102458853","mag":"102458853"},"language":"en","primary_location":{"id":"pmh:oai:escholarship.org/ark:/13030/qt9rw879xp","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/9rw879xp","pdf_url":"https://escholarship.org/uc/item/9rw879xp","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://escholarship.org/uc/item/9rw879xp","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011861863","display_name":"Jeff Vance Martin","orcid":"https://orcid.org/0000-0001-5575-2873","observed_orcids":["https://orcid.org/0000-0001-5575-2873"]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Martin","raw_affiliation_strings":["Lawrence Berkeley National Laboratory"],"raw_orcid":"https://orcid.org/0000-0001-5575-2873","affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034548654","display_name":"Stephen Gross","orcid":"https://orcid.org/0000-0003-0711-787X","observed_orcids":["https://orcid.org/0000-0003-0711-787X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stephen Gross","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048302859","display_name":"James C. Schnable","orcid":"https://orcid.org/0000-0001-6739-5527","observed_orcids":["https://orcid.org/0000-0001-6739-5527"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James C. Schnable","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6739-5527","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110020935","display_name":"Cindy Choi","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cindy Choi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375188","display_name":"Mei Wang","orcid":"https://orcid.org/0000-0001-7714-1002","observed_orcids":["https://orcid.org/0000-0001-7714-1002"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mei Wang","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7714-1002","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103827606","display_name":"KANWAR PAL SINGH","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kanwar Singh","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003472099","display_name":"Erika Lindquist","orcid":"https://orcid.org/0000-0003-2249-7225","observed_orcids":["https://orcid.org/0000-0003-2249-7225"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Erika Lindquist","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-2249-7225","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100352749","display_name":"Feng Chen","orcid":"https://orcid.org/0000-0003-3508-8834","observed_orcids":["https://orcid.org/0000-0003-3508-8834"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Feng Chen","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-3508-8834","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025894522","display_name":"Chia\u2010Lin Wei","orcid":"https://orcid.org/0000-0001-6820-0461","observed_orcids":["https://orcid.org/0000-0001-6820-0461"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chia\u2010Lin Wei","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6820-0461","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5100781872","display_name":"Zhong Wang","orcid":"https://orcid.org/0000-0002-6307-0458","observed_orcids":["https://orcid.org/0000-0002-6307-0458"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhong Wang","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6307-0458","affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.00695342,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.006800000090152025,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.006399999838322401,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plant-transcriptome","display_name":"plant transcriptome","score":0.9890000224113464},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"deep sequencing","score":0.7609999775886536},{"id":"https://openalex.org/keywords/transcriptome-sequencing","display_name":"transcriptome sequencing","score":0.7089999914169312},{"id":"https://openalex.org/keywords/plant-genomics","display_name":"plant genomics","score":0.593999981880188}],"concepts":[{"id":"https://openalex.org/C2777080597","wikidata":"https://www.wikidata.org/wiki/Q906118","display_name":"Disclaimer","level":2,"score":0.8924321532249451},{"id":"https://openalex.org/C2779056723","wikidata":"https://www.wikidata.org/wiki/Q329717","display_name":"Warranty","level":2,"score":0.7759710550308228},{"id":"https://openalex.org/C2779027411","wikidata":"https://www.wikidata.org/wiki/Q167270","display_name":"Trademark","level":2,"score":0.7376187443733215},{"id":"https://openalex.org/C2778137410","wikidata":"https://www.wikidata.org/wiki/Q2732820","display_name":"Government (linguistics)","level":2,"score":0.6112140417098999},{"id":"https://openalex.org/C108170787","wikidata":"https://www.wikidata.org/wiki/Q3951828","display_name":"Agency (philosophy)","level":2,"score":0.5880202651023865},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.5006115436553955},{"id":"https://openalex.org/C90673727","wikidata":"https://www.wikidata.org/wiki/Q901718","display_name":"Product (mathematics)","level":2,"score":0.44685298204421997},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.41210564970970154},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.4008542597293854},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.3522183299064636},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.34677672386169434},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.23756888508796692},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20172229409217834},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10104647278785706},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0889226496219635},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:escholarship.org/ark:/13030/qt9rw879xp","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/9rw879xp","pdf_url":"https://escholarship.org/uc/item/9rw879xp","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:osti.gov:1184405","doi":null,"is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1184405","pdf_url":"https://www.osti.gov/servlets/purl/1184405","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:qt9rw879xp","doi":null,"is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/9rw879xp","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Martin, Jeffrey. (2012). Deep sequencing of a plant transcriptome. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/9rw879xp","raw_type":"article"},{"id":"mag:102458853","doi":null,"is_oa":false,"landing_page_url":"http://1ofdmq2n8tc36m6i46scovo2e.wpengine.netdna-cdn.com/wp-content/uploads/2013/11/MaizePoster_JGIUserMeeting2012v1-Martin-FINAL.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:escholarship.org/ark:/13030/qt9rw879xp","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/9rw879xp","pdf_url":"https://escholarship.org/uc/item/9rw879xp","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1469193349","display_name":null,"funder_award_id":"DE\u2010AC02\u201005CH11231","funder_id":"https://openalex.org/F4320308590","funder_display_name":"University of California"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G419881185","display_name":null,"funder_award_id":"DEAC02\u201305CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G42916606","display_name":null,"funder_award_id":"DE AC02 05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7205239661","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G834277795","display_name":null,"funder_award_id":"DE\u2013AC02\u201305CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320308590","display_name":"University of California","ror":"https://ror.org/00pjdza24"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W102458853.pdf","grobid_xml":"https://content.openalex.org/works/W102458853.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W170998737","https://openalex.org/W334260928","https://openalex.org/W1971899779","https://openalex.org/W2151671981"],"related_works":["https://openalex.org/W7098154029","https://openalex.org/W2522281154","https://openalex.org/W2904000228","https://openalex.org/W7222993003","https://openalex.org/W2926358864","https://openalex.org/W178388494","https://openalex.org/W274366060","https://openalex.org/W4311894846","https://openalex.org/W6940053572","https://openalex.org/W2124110196"],"abstract_inverted_index":{"Deep":[0],"sequencing":[1],"of":[2,49,62,88,99,101,112,124,136,139,149,178,181,185,205,265,268,274,285,297,300],"a":[3,68],"plant":[4],"transcriptome":[5],"Jeff":[6],"Martin":[7],"1":[8,12,20,24,28,32,36,40,45,47],",":[9,13,17,21,25,29,33,37,41,46],"Stephen":[10],"Gross":[11],"James":[14],"Schnable":[15],"2":[16,60],"Cindy":[18],"Choi":[19],"Mei":[22],"Wang":[23,44],"Kanwar":[26],"Singh":[27],"Erika":[30],"Lindquist":[31],"Feng":[34],"Chen":[35],"Chia-Lin":[38],"Wei":[39],"and":[42,110,272],"Zhong":[43],"Department":[48,87],"Energy":[50,89],"Joint":[51,91],"Genome":[52,92],"Institute":[53,93],"//":[54],"LBNL":[55],"-":[56,65],"Walnut":[57],"Creek,":[58],"CA":[59,67],"University":[61,138,180,267,299],"California":[63,301],"Berkeley":[64],"Berkeley,":[66],"To":[69],"whom":[70],"correspondence":[71],"may":[72],"be":[73],"addressed.":[74],"E-mail:":[75],"jamartin@lbl.gov":[76],"March":[77],"20,":[78],"2012":[79],"ACKNOWLEDGMENTS:":[80],"The":[81,108,176,263,270,295],"work":[82,150],"conducted":[83],"by":[84,96,152,234,253],"the":[85,97,102,113,125,134,137,153,167,179,200,254,266,286,298],"US":[86],"(DOE)":[90],"is":[94,160],"supported":[95],"Office":[98],"Science":[100],"DOE":[103],"under":[104],"Contract":[105],"Number":[106],"DE-AC02-05CH11231.":[107],"views":[109,271],"opinions":[111,273],"authors":[114,275],"expressed":[115,276],"herein":[116,225,277],"do":[117,278],"not":[118,219,243,279],"necessarily":[119,244,280],"state":[120,281],"or":[121,129,133,192,194,203,210,213,232,240,246,251,258,262,282,290,294],"reflect":[122,283],"those":[123,284],"United":[126,154,168,255,287],"States":[127,155,169,256,288],"Government,":[128],"any":[130,172,184,189,196,206,227,259,291],"agency":[131,173,260,292],"thereof,":[132,174,261],"Regents":[135,177,264,296],"California.":[140,269],"DISCLAIMER:":[141],"This":[142],"document":[143,159],"was":[144],"prepared":[145],"as":[146],"an":[147],"account":[148],"sponsored":[151],"Government.":[156],"While":[157],"this":[158],"believed":[161],"to":[162,226],"contain":[163],"correct":[164],"information,":[165,207],"neither":[166],"Government":[170,257,289],"nor":[171,175,183],"California,":[182],"their":[186],"employees,":[187],"makes":[188],"warranty,":[190],"express":[191],"implied,":[193],"assumes":[195],"legal":[197],"responsibility":[198],"for":[199],"accuracy,":[201],"completeness,":[202],"usefulness":[204],"apparatus,":[208],"product,":[209,230],"process":[211],"disclosed,":[212],"represents":[214],"that":[215],"its":[216,235,248],"use":[217],"would":[218],"infringe":[220],"privately":[221],"owned":[222],"rights.":[223],"Reference":[224],"specific":[228],"commercial":[229],"process,":[231],"service":[233],"trade":[236],"name,":[237],"trademark,":[238],"manufacturer,":[239],"otherwise,":[241],"does":[242],"constitute":[245],"imply":[247],"endorsement,":[249],"recommendation,":[250],"favoring":[252],"thereof":[293]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2016-06-24T00:00:00"}
